PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18651.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 491aa    MW: 54529.8 Da    PI: 4.8112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18651.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12309354454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  mrna18651.1-v1.0-hybrid 309 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 354
                              799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4724217IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.54E-18304368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.015305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.31E-14308358No hitNo description
PfamPF000107.2E-10309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16309369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-16311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDDLIISPTS SSSLVSLPHE PATLQQRLQF ILQSQPELWS YAIFWLASND VENGRLLLGW  60
GDGHFQGPED PSPDLNNRLS SSGDGSLLHS DRRKILKGIQ SILNDTNNNN PELDMDNFMA  120
LNGDVSDAEW FYVMSLTRSF AIGDGSVPGK AFGSGSFVWL SGAHELQFNS CERAKEAQIH  180
GIETLICIPT SNGVLEMGSS GLVRENWGLI QQAKSLFGSD QPDPETRPLE FINRNFSFAD  240
IGIVAGVQEE DNSSYNDDKK HVLGYNKKKN NNGLQNPTPA DFADSDFQLK RTPKKRGRKP  300
GMGRDTPLNH VEAERQRREK LNHRFYALRA VVPNVSRMDK ASLLSDAVSY INELKAKVDE  360
LESQLQRESK KVKVEMADNL DNQSTTTTAS VEQTQTVTPD NNNNNNNGSG LEIEVKIVGT  420
DAMIRVQSEN VNYPSARLMT AMRDLEFQIH HASLSSINDL MLQDIVVKVP DNMKNEEGLK  480
AALLGILDQN E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-34232178192Transcription factor MYC3
4rqw_B4e-34232178192Transcription factor MYC3
4rs9_A4e-34232178192Transcription factor MYC3
4yz6_A4e-34232178192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18651.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306627.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A2P6SIR30.0A0A2P6SIR3_ROSCH; Putative transcription factor bHLH family
STRINGXP_004306627.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-77bHLH family protein