PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18608.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 482aa    MW: 53900.3 Da    PI: 6.5723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18608.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13266317155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  mrna18608.1-v1.0-hybrid 266 QRMTHIAVERNRRRQMNDHLNVLRSLMPPS---YIQRGDQASIVGGAIDFVKELE 317
                              79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.53E-13264321No hitNo description
SuperFamilySSF474591.44E-16265334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.777265316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11266317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-14266330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-11271322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.987410482IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MRTRDQEHNS LVSKEVPSGC FGWTCGKLGL THRQTSSDRE SIEGLSKAFL FSFFLLSLLC  60
SVHSERDREP PLRFFGDHLD LQCIDPGFTT TTTTHGLRFE EEEEAQYLSG LEDRMPFLQM  120
LQNIDFPPCD FSPKEPSFQA LLRLQLLNKA TTAVWPEMGY TQNAQIHTLE ALESCVTQDN  180
QQQLYSPAKS EGQNPHQNNT LSVSGTLEGG GGASSDCNQE LQQLNSAKMT PNQTQFTKSA  240
STPATRERRK RKRTRPTKNK EEVESQRMTH IAVERNRRRQ MNDHLNVLRS LMPPSYIQRG  300
DQASIVGGAI DFVKELEQHL QSLEAQKRMR RAEGFTTTNV DPNNNNSMTS SSPSSSSAMT  360
MPSNGMFMSL SQCRIGSTEE GNTRGDDGVT AQNKSEAAEV DVTVIQTHVN LKVQCQKRPG  420
QLVRALVAFE DIRLTVLHLN ITSSEDKVLY SFNLKIEEGC KLGSADDIAR AVHQIFSFIN  480
GS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252RRKRKR
2266277RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18608.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894305e-92KP689430.1 Prunus pseudocerasus isolate Unigene20562 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306611.20.0PREDICTED: transcription factor bHLH57-like
TrEMBLA0A2P6SIV40.0A0A2P6SIV4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004308405.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-66bHLH family protein