PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18594.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 377aa    MW: 43775.6 Da    PI: 7.2399
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18594.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.64.3e-3284186199
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  mrna18594.1-v1.0-hybrid  84 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 169
                              89***************************966667889************************************************ PP

                              EE-SSSEE..EEEEE-S CS
                       B3  83 kldgrsefelvvkvfrk 99 
                              +++ +++  l++ ++r+
  mrna18594.1-v1.0-hybrid 170 ERSVSDSNVLYIDWRRR 186
                              *8866777799999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4278192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-3180189IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-2782177No hitNo description
PfamPF023623.3E-2984186IPR003340B3 DNA binding domain
SMARTSM010191.3E-2584187IPR003340B3 DNA binding domain
PROSITE profilePS5086315.11584187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEYYVKGDKK GYSEKEEDQE EEEEDKNHII NSKYLSPSYN YGSSSSSQTA EAINFMDLSI  60
RSAKDDDNSN KNDWPPNSER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSANEKG  120
LLLNFQDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKDKK LDAGDIVSFE RSVSDSNVLY  180
IDWRRRPPPP LPPNQASYWG GGGRFYSLQR TPSMSMPLRH HEQFHYNIHH PYHHQYQYHQ  240
MNPYQLQQQH HQHQQYYHQS GISPAVVIDS VPLVQHHPHH HVKTMSPTTN KRLRLFGVNM  300
ECSPMQEDEP EQCQILSSTV ASLSPHQHHH HHHLPSSSLS QPLELRLPNY AAPLPGAADQ  360
LLSEKGKSTS LSFYLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-65781872114B3 domain-containing transcription factor NGA1
5os9_B4e-65781872114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18594.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306604.10.0PREDICTED: B3 domain-containing transcription factor NGA1
SwissprotO827992e-77NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2P6SIV80.0A0A2P6SIV8_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004306604.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-66B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]