PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18590.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 245aa    MW: 28637.6 Da    PI: 8.7195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18590.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1011.6e-3191642128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk........................kvkaeekewyfFs 62 
                              p+G+r++P+deel ++ L++k + k+ +++++i+++ d++k+eP++Lp+                        +  +++++wyfF+
  mrna18590.1-v1.0-hybrid   9 PKGYRYNPSDEELFSD-LEQKNHCKDSQITTIIPDIdDVCKYEPRQLPElaftraenlvgkfffffffwiireESWHSQRKWYFFT 93 
                              89************66.9***99999999999****99**********66899****99999999999987653334778****** PP

                      NAM  63 krdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                              + d ky++++r nr+t +gyWk tgkd+++++  +++++g k+tL+fy     + +++++kt Wv+hey l
  mrna18590.1-v1.0-hybrid  94 RLDYKYTNSSRVNRTTGEGYWKITGKDRAIKAPdSKAVIGRKRTLTFYkrgvLKAQKNSQKTGWVIHEYFL 164
                              *******************************99666779*********544436778889*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-336186IPR003441NAC domain
PROSITE profilePS5100538.3398186IPR003441NAC domain
PfamPF023653.6E-179163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSSGGFTAPK GYRYNPSDEE LFSDLEQKNH CKDSQITTII PDIDDVCKYE PRQLPELAFT  60
RAENLVGKFF FFFFFWIIRE ESWHSQRKWY FFTRLDYKYT NSSRVNRTTG EGYWKITGKD  120
RAIKAPDSKA VIGRKRTLTF YKRGVLKAQK NSQKTGWVIH EYFLIQESCD PPKQIGEYVV  180
CCLKYKVLEN KSDSIIAVKT NNGTHCEDIG IADPEWLVDQ HRTEVEIITV WIAKYYEMNS  240
KALK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-19618115160NO APICAL MERISTEM PROTEIN
1ut4_B5e-19618115160NO APICAL MERISTEM PROTEIN
1ut7_A5e-19618115160NO APICAL MERISTEM PROTEIN
1ut7_B5e-19618115160NO APICAL MERISTEM PROTEIN
3swm_A6e-19618118163NAC domain-containing protein 19
3swm_B6e-19618118163NAC domain-containing protein 19
3swm_C6e-19618118163NAC domain-containing protein 19
3swm_D6e-19618118163NAC domain-containing protein 19
3swp_A6e-19618118163NAC domain-containing protein 19
3swp_B6e-19618118163NAC domain-containing protein 19
3swp_C6e-19618118163NAC domain-containing protein 19
3swp_D6e-19618118163NAC domain-containing protein 19
4dul_A5e-19618115160NAC domain-containing protein 19
4dul_B5e-19618115160NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18590.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306602.11e-137PREDICTED: protein ATAF2-like
RefseqXP_011468878.11e-137PREDICTED: protein ATAF2-like
TrEMBLA0A2P6S9W82e-88A0A2P6S9W8_ROSCH; Putative transcription factor NAM family
STRINGXP_004306602.11e-136(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3276322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-26NAC transcription factor-like 9