PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18589.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 745aa    MW: 83768.9 Da    PI: 5.807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18589.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.81e-364566081128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........................kvkaeekewyfF 61 
                              +p+G+rFhP+deel+++ L++k + k+ +++++i+e+d++k+eP++Lp+                         +  +++++wyfF
  mrna18589.1-v1.0-hybrid 456 VPKGYRFHPSDEELLSD-LEQKNHCKDSQITTIIPEIDVCKYEPRQLPElafrgaenlvgkffsfffffwiikeESWHSQRKWYFF 540
                              589************76.9*******9999999***************6689********999999999977553333778***** PP

                      NAM  62 skrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              + rd ky++++r+nr+t +g+Wk tgkd+++++  +++++g k+tL+fyk   +k++kt+Wvmhey l
  mrna18589.1-v1.0-hybrid 541 TLRDYKYTNSSRANRTTGEGFWKITGKDRAIKAPdSKAVIGRKRTLTFYKRGVSKAQKTSWVMHEYFL 608
                              ********************************99666779**********999*************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-38449629IPR003441NAC domain
PROSITE profilePS5100541.148456630IPR003441NAC domain
PfamPF023651.1E-18457607IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MLGIIEHKTH ISSSRSQPPQ SPIKRGTLIH GGGHRPLFSI RKSSTFTSLT SSPKEEFDDP  60
PVLKPEVFSL ATPHQQISIQ SLKLSSPSSR VGRPHGQEMK RNFVLCRLKK KDERTNIGAC  120
DEGEPRTHDP SDFENVLALE ENTQPEEILG SLFPSRAVPE SPQSEDYLSS TLRGNFLCKQ  180
MLPVLYERDT DAMLHNQLLG KNDAAVNVAA DKSWDFDRVQ SLTDEIEHGP SPILLQEPQA  240
SYSRDKRSIH CITLATDEKH FVEDQDIQGG QALETYVSVT LFASSLFERD KDVALLNQLL  300
DKNTFSVNTE ASRPWNIDRF QSVSEETNHF DIKIGAGPSM TFATEESSLN EISHFDFTAL  360
STSERLPPAT GSMPSMPNSI PCEPDQRRIL ALYETYALAN CATTPLLLLL ASYLIIPYYD  420
AKTKGLKWIN EEGHHRLSFQ EQLLTVKQMS CGGFTVPKGY RFHPSDEELL SDLEQKNHCK  480
DSQITTIIPE IDVCKYEPRQ LPELAFRGAE NLVGKFFSFF FFFWIIKEES WHSQRKWYFF  540
TLRDYKYTNS SRANRTTGEG FWKITGKDRA IKAPDSKAVI GRKRTLTFYK RGVSKAQKTS  600
WVMHEYFLIQ ESCDPPKQIG KYVVCCLKYN NSASNSESQA ANVIPEGYSQ PGANLGSDFD  660
LFLPTDYVCT QPSINGGPRD FSNDNSFIEL DDLPSFYEGI DFSQFSDRVI DGGRGVTSDR  720
NTSVVYGSEN DYSALASGAS LHHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-2645460813140Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18589.1-v1.0-hybrid
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-30NAC-domain protein 101