PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18576.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 241aa    MW: 27115.7 Da    PI: 10.219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18576.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-161095297
                             EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                             fkvl     + s++l++p  f +++ g ++++     l++++g +W v +  +   gr +l+kGWk+Fv++ngL+ g+f+vF++ g+s
  mrna18576.1-v1.0-hybrid 10 FKVL--IGDF-SDQLSIPQAFHKHFdGRVPQQ---SHLQTPTG-TWFVDV--KSDNGRLFLQKGWKQFVRDNGLRLGEFLVFRYAGNS 88
                             5555..3344.567*******97775545444...57777776.8*****..999999****************************99 PP

                             EE..EEEEE CS
                       B3 89 efelvvkvf 97
                             +f  +v ++
  mrna18576.1-v1.0-hybrid 89 KF--FVDIY 95
                             99..88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-223100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-225103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.014698IPR003340B3 DNA binding domain
CDDcd100177.19E-20795No hitNo description
PfamPF023622.1E-14996IPR003340B3 DNA binding domain
SMARTSM010191.8E-12998IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTRKRKPSFF KVLIGDFSDQ LSIPQAFHKH FDGRVPQQSH LQTPTGTWFV DVKSDNGRLF  60
LQKGWKQFVR DNGLRLGEFL VFRYAGNSKF FVDIYARHGC KKELIMAATG SERPLVKRQS  120
EEIHRTNANS KKYVGSSTRH PKQNMDNENL EGSTGGYKAG QETVTVKSEP ISDSELKTSV  180
DLDESIRNMN TRETLASQPQ VENRTQATAL EAANKCASKH PCFRVILTQN YVTKGMLVGT  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18576.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308266.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2P6RRW51e-111A0A2P6RRW5_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004308266.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16060710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-18B3 family protein