PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18542.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 276aa    MW: 31191.3 Da    PI: 5.1945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18542.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-07164207755
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++ r RR++i ++ +eL +l+P        K++ ae+L+ A  Y+k Lq
  mrna18542.1-v1.0-hybrid 164 IAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYSYVKFLQ 207
                              56799*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.73E-8155209No hitNo description
PROSITE profilePS5088813.014157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-10160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-11160215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5165207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVLNWEAVPE FFDSDMTCIQ QNLEAELVGD FLQCVNADYS NPHNFLDPWY DTCSLVNFEY  60
PGFDHLHPPS SFKPDMFPVQ DFEPYALPKR QKCSKDYQYP DLTPGFSSAF VPNPCPRPEY  120
FPGAFTAPAL DFQHAEVVDG STRKHIVENV GKKVEERSVS PQSIAARERR RKITEKTQEL  180
GKLVPGGSKM NTAEMLTAAY SYVKFLQAQM GILQFMGSFQ EVKAATATKV LHVAASPTIQ  240
EKLYMGQKCL VPKEFVEDSR ATERYKLQQD DAVNY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18542.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468863.10.0PREDICTED: transcription factor bHLH52-like isoform X1
TrEMBLA0A2P6Q8E51e-134A0A2P6Q8E5_ROSCH; Putative transcription factor bHLH family
STRINGXP_009361875.12e-70(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.18e-26bHLH family protein