PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18483.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 864aa    MW: 97312.1 Da    PI: 9.9399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18483.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.1e-15957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k+i+nk   + tfskRr+g++ KA EL+ +C+ae+a++ +s+ g++y +
  mrna18483.1-v1.0-hybrid  9 KKIQNKAYLKATFSKRRKGLFGKARELCDMCGAEIAILTVSPGGRFYNF 57
                             6899*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.862161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-21170IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-13323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-133859IPR002100Transcription factor, MADS-box
SuperFamilySSF479542.13E-44628764IPR013763Cyclin-like
PfamPF001341.2E-37638764IPR006671Cyclin, N-terminal
Gene3DG3DSA:1.10.472.106.1E-39655757IPR013763Cyclin-like
CDDcd000436.57E-19667756No hitNo description
SMARTSM003851.3E-20673757IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.105.6E-23758819IPR013763Cyclin-like
CDDcd000438.80E-13764845No hitNo description
SuperFamilySSF479549.64E-23766860IPR013763Cyclin-like
SMARTSM013322.8E-14766858IPR004367Cyclin, C-terminal domain
PfamPF029841.2E-13766820IPR004367Cyclin, C-terminal domain
SMARTSM003859.4E-7770850IPR013763Cyclin-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MGRRKIEIKK IQNKAYLKAT FSKRRKGLFG KARELCDMCG AEIAILTVSP GGRFYNFGRP  60
NVESVIARYC GDESSITVDE NHDDCVISHE DDDEDLEGEQ QRELEVSTDE VEDEDDIGSS  120
HKAREEKEII NRIKEMNLIE HINRERDGRM RLQKFWWDEE KPIDPEQLEM YYHSLTQLRN  180
NVVSVLNDRK MRELYAKDYL NQTPSFYNGQ VIPPFKFSQT QQEPDQRFPK MASFKRRSSA  240
TGPDANKIGA FKSNVSMASN RFGKENLTRT VGAKTFKVYT EKGAAKSDAD SRASVPVKKS  300
AILDNKSVAK AGLLSMEKGK ATLGSSANGN VGRRALADVS NVKGNSSRVV GGDASKPMIG  360
KTERKKSLQR ASVGAGTRTV NVTSRRSLLG KERESSQGVS ALQTTRRGIK DLKVPSENQN  420
TKAMGGLSNE SLVADSRRIS RNSLKPTRLS LPVVKANPEE ASISKENAGS PVKAKVGKKV  480
LSRVGNDIRS YVSRNRVSDG FLIRGQRSSN VRVMPRKSTK STLKVPESRG MQPKYTRGPN  540
NVASVTATTS KTQKAVEFVI AEDVKQETTQ GEVPSAGNCC KTASDIISRR NSNRRRSYTS  600
LLMTGPKLLE ERDEAMKEEL PSIDNHYNQL EVSDYVDEIY QYYWTYEAQN PPQANFLLIQ  660
ADITPHMRGI LVNWLIEVHF KFDLMQETLY LMVTLLDQYL SQVPIKKNEM QLVGLTALLL  720
ASKYEDFWHP RVKELISISA ESYTRDQILG MERSILKKLK FRLNTPTPYV FMLRFLKAAQ  780
SDTKLEHLAF YLIELCLVEY EPIMVKPSLL CAAAIYVARD CAEMILRFQK AAGIGKLKVT  840
YEKYMRSNLS RVASLEPLER LPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4cfu_D3e-356288181193CYCLIN-A2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18483.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468839.10.0PREDICTED: putative cyclin-B3-1 isoform X1
TrEMBLA0A2P6Q8710.0A0A2P6Q871_ROSCH; Putative cyclin
STRINGXP_004308234.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-22M-type_MADS family protein