PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18438.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 297aa    MW: 33308 Da    PI: 5.4069
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18438.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32114170258
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  mrna18438.1-v1.0-hybrid 114 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSSEDPDTLIITYEGLHLH 170
                              8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30106170IPR003657WRKY domain
PROSITE profilePS5081128.07108173IPR003657WRKY domain
SuperFamilySSF1182902.88E-27109170IPR003657WRKY domain
SMARTSM007741.8E-36113172IPR003657WRKY domain
PfamPF031065.2E-26114170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEEAMSTNWT VGFEEELVRE LLDNESPFFV LPEEAIEYPQ MSVSSKEGLN RFVQNVYSGP  60
TIHDIETALS VTTGITVQPQ ELSQARLSIL ERGLSKVEHK YTLKIKSCDT GMADDGYKWR  120
KYGQKSIKNS PNPRSYYRCT NPRCSAKKQV ERSSEDPDTL IITYEGLHLH FAYPFFHLTQ  180
AQNPNPPTKK PKKKTSPAQP EDHHEQVAQE SSRSVTPDPE PDLHPGGTYA DQPPQEFVEE  240
ERGSQGLLED VVPFMIRKPS SASSNSSCCS YRSPPTSPSS YSWPSYFDVG INHSIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-211121701371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18438.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852909e-34KC485290.1 Jatropha curcas WRKY transcription factor 38 (WRKY38) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302766.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A2P6R9Y31e-157A0A2P6R9Y3_ROSCH; Putative transcription factor WRKY family
STRINGXP_004302766.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-52WRKY DNA-binding protein 49