PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna18433.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 524aa MW: 57471.6 Da PI: 5.186

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna18433.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	66	7.3e-21	392	481	1	93
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL+++A+av+++d++ a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++yk + +++t+ +++l+a++lf mrna18433.1-v1.0-hybrid 392 LRSLLITVAQAVAADDHRTANELLKKVRLHSSPFGDGTQRLAHCFADGLEARLAGTGSQIYKGFVSKRTP---AADVLKAYHLFLA 474 689************************************************************99999...9******** PP GRAS 87 vsPilkf 93 ++P+ k+ mrna18433.1-v1.0-hybrid 475 ACPFKKM 481 *9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.473	366	523	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-18	392	481	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MDPRLRSFTD SLNGVRLSNQ PFSFLSHQNI VPQSPFDSHP FIGSDYRELN YPTPDVTPND 60 LSSVSSLSHE EEDCDFSDEV LKYINQMLME EDMEDKTCML QESLELQAAE KSFYDVLGKK 120 YPPSPEVNHE FSIPYGEIPD EGFSGNGSNY VTSSGSNSGF SGNGSNYITS SSNSGSYFSD 180 SSVIQSPGGY MSQFQGLPPY NISHSSYGSS TRVSSLDELV DSPSSSHHVP DFSTESQSVW 240 QFNKGVQEAS RFLPGQTNLV VDLDANWLSA QSSKVGTEEE VVKVEKKDEG ENSPSGSRGR 300 KKLYREDDED GEDNRSSKQP AVSTESTLRS EMFDKILLCS LGPGKEHLIS KREELQNGMI 360 KSVPQNEKSK GSNGGKGRGK KQSGNKKDVV DLRSLLITVA QAVAADDHRT ANELLKKVRL 420 HSSPFGDGTQ RLAHCFADGL EARLAGTGSQ IYKGFVSKRT PAADVLKAYH LFLAACPFKK 480 MDGREGPYLP FLLGNLQKEL ESHIVIACNL LLSCSRGIRV ESR*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MDPRLRSFTD SLNGVRLSNQ PFSFLSHQNI VPQSPFDSHP FIGSDYRELN YPTPDVTPND  60
LSSVSSLSHE EEDCDFSDEV LKYINQMLME EDMEDKTCML QESLELQAAE KSFYDVLGKK  120
YPPSPEVNHE FSIPYGEIPD EGFSGNGSNY VTSSGSNSGF SGNGSNYITS SSNSGSYFSD  180
SSVIQSPGGY MSQFQGLPPY NISHSSYGSS TRVSSLDELV DSPSSSHHVP DFSTESQSVW  240
QFNKGVQEAS RFLPGQTNLV VDLDANWLSA QSSKVGTEEE VVKVEKKDEG ENSPSGSRGR  300
KKLYREDDED GEDNRSSKQP AVSTESTLRS EMFDKILLCS LGPGKEHLIS KREELQNGMI  360
KSVPQNEKSK GSNGGKGRGK KQSGNKKDVV DLRSLLITVA QAVAADDHRT ANELLKKVRL  420
HSSPFGDGTQ RLAHCFADGL EARLAGTGSQ IYKGFVSKRT PAADVLKAYH LFLAACPFKK  480
MDGREGPYLP FLLGNLQKEL ESHIVIACNL LLSCSRGIRV ESR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna18433.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466550.1	0.0	PREDICTED: scarecrow-like protein 9
TrEMBL	A0A2P6R9Y8	0.0	A0A2P6R9Y8_ROSCH; Putative transcription factor GRAS family
STRING	XP_004302737.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	2e-50	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	mrna18433.1-v1.0-hybrid