PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna18383.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 381aa MW: 39861.8 Da PI: 9.443

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna18383.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	90	149	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+ss mrna18383.1-v1.0-hybrid 90 EPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSS 149 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	77	138	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	92	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.674	93	147	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	95	131	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MVFSSIPAYL DPANWQQQPS PHHHHHHHLL SGSNSNNNIN NNSQLHPLPP PPPPPPSNPG 60 GGGSGPGGAG SIRPGSMADR ARMANIPLPE PALKCPRCDS TNTKFCYFNN YSLTQPRHFC 120 KTCRRYWTRG GALRNVPVGG GCRRNKRSSK GGGSSRSKSP VSSSDRPTGS ASSSGQAIPS 180 NSSAGTVDMI AAGLSPQIPP LRFINPFADH HFGASENLGM NYGLSYGGGV GDLGFQIGSG 240 LGGGITSTPT GSLFEQQWRF QQQTPSFPFL SGGLDSAPGL FEGSGVEFSG YNPVRPRLLS 300 SGSSVGVSSQ IASVKTEDPH NQNHQQQEMN LSRQLSGIQG GNDSQYWING AGGNANGTST 360 TAWTDLSGFS STSTATNHPL *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MVFSSIPAYL DPANWQQQPS PHHHHHHHLL SGSNSNNNIN NNSQLHPLPP PPPPPPSNPG  60
GGGSGPGGAG SIRPGSMADR ARMANIPLPE PALKCPRCDS TNTKFCYFNN YSLTQPRHFC  120
KTCRRYWTRG GALRNVPVGG GCRRNKRSSK GGGSSRSKSP VSSSDRPTGS ASSSGQAIPS  180
NSSAGTVDMI AAGLSPQIPP LRFINPFADH HFGASENLGM NYGLSYGGGV GDLGFQIGSG  240
LGGGITSTPT GSLFEQQWRF QQQTPSFPFL SGGLDSAPGL FEGSGVEFSG YNPVRPRLLS  300
SGSSVGVSSQ IASVKTEDPH NQNHQQQEMN LSRQLSGIQG GNDSQYWING AGGNANGTST  360
TAWTDLSGFS STSTATNHPL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna18383.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302761.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
TrEMBL	A0A2P6RA37	1e-180	A0A2P6RA37_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004302761.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	8e-37	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	mrna18383.1-v1.0-hybrid