PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18382.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family E2F/DP
Protein Properties Length: 290aa    MW: 32344.5 Da    PI: 8.6836
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18382.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.83.7e-2362140471
                  E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                               +Lr+++     +++k ++ g+ t++eva+e+++e              d+kn+rRR+YD+lNVL+a+++i+k ek++i wkg
  mrna18382.1-v1.0-hybrid  62 GGLRQFSAI---VCSKLKSkGRATYDEVANEIIAElpgiygqtealseyDMKNIRRRVYDALNVLMAMDIITK-EKKQIWWKG 140
                              69*******...****9999*****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-3456144IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.9E-2259140IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-2062140IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.98E-1962141IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.39E-29145246IPR014889Transcription factor DP, C-terminal
SMARTSM011385.1E-34147286IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-36148267No hitNo description
PfamPF087817.8E-29151262IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEVEYFTDSF GELSGGHSSP KTPRSASVSN ADSTTFCCDN TSTPDVDKSA GKKRRGSRYT  60
AGGLRQFSAI VCSKLKSKGR ATYDEVANEI IAELPGIYGQ TEALSEYDMK NIRRRVYDAL  120
NVLMAMDIIT KEKKQIWWKG LRDTNAIDRE GIKAQRVKLM GRINAKEAYL KDLEEQMADL  180
QNLMLRNKQL LKSGNSSHKG FSFPFILAQT SNNATVEIEI SEDMQLVHCD FNSTPFSLHD  240
DTSILKMLRC RQLPESRNVS QSSSVYSSSS SGMASTRPFL WNSETQTPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-25631411189PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18382.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305211.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-75DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2P6RA231e-167A0A2P6RA23_ROSCH; Putative transcription factor E2F-DP family
STRINGXP_004305211.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.16e-77Transcription factor DP