PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna18340.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 259aa MW: 29055.9 Da PI: 8.8106

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna18340.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5e-32	14	68	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+ Fv+av++LGG+++AtPk il++m+v gLt++h+kSHLQkYR+ mrna18340.1-v1.0-hybrid 14 KERLRWTQELHDMFVDAVTKLGGPDRATPKGILKAMGVSGLTIYHIKSHLQKYRI 68 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.426	11	71	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-17	13	68	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-30	13	69	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-26	14	69	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-9	16	67	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-12	101	141	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGSSKCLDAS AGNKERLRWT QELHDMFVDA VTKLGGPDRA TPKGILKAMG VSGLTIYHIK 60 SHLQKYRISK FVPETTSKAG NLQRKNISEI LPNFGTTSAA QLNEALHLMH IQVQRRLSDQ 120 LEVHKSLKQK FEAQGRFLDT ISADRSRNDN RLIITKPIKP MSRKTLPSLC EESELNGKEF 180 GTSDSDAEKT EIQSSGEEFQ ALKKQRVQNQ NEDNMAWNFH ILEDQTTNIS SYPAVYDQIS 240 FPWNNFGACT SPLVPSFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-23	14	71	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-23	14	71	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-23	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-23	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-23	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-23	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-23	14	71	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-23	14	71	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-23	14	71	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-23	14	71	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-23	14	71	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-23	14	71	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna18340.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024190972.1	1e-178	myb family transcription factor PHL7-like
TrEMBL	A0A498K661	1e-103	A0A498K661_MALDO; Uncharacterized protein
STRING	XP_008244092.1	1e-104	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-49	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna18340.1-v1.0-hybrid