PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18314.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 810aa    MW: 88184 Da    PI: 6.4824
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18314.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.4e-093724091954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  mrna18314.1-v1.0-hybrid 372 FEHflHPYPKDSDKHLLAKQTGLTRSQVSNWFINARVR 409
                              554459******************************88 PP
2BELL119.41.7e-38236307172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              erqe+q+kk kL+++l+eVd+rY+qy+ q+q+vi+sFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  mrna18314.1-v1.0-hybrid 236 ERQEIQMKKGKLITMLDEVDQRYRQYHRQMQMVIASFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 307
                              79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-64161305IPR006563POX domain
PfamPF075261.3E-49166304IPR006563POX domain
PROSITE profilePS5007112.082350413IPR001356Homeobox domain
CDDcd000863.92E-12353414No hitNo description
SMARTSM003891.7E-8353417IPR001356Homeobox domain
SuperFamilySSF466892.1E-16354419IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-28356419IPR009057Homeodomain-like
PfamPF059202.0E-17370409IPR008422Homeobox KN domain
Gene3DG3DSA:3.30.420.102.4E-4671746IPR012337Ribonuclease H-like domain
SuperFamilySSF530987.59E-8671747IPR012337Ribonuclease H-like domain
PfamPF134561.1E-20671768No hitNo description
CDDcd062222.72E-17671770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MNHGGYVPYS DATQQQHSPS AAATNQQLVF LNSAGANNQL AQASTLPHAP PSHTQQFVGI  60
PLPTVSTQDP SNSQGMHPHH DMAALHAFMP RIQTQYALWN SIDPSTRDTP RAQQGLSLSL  120
SSQQPGFGSF RGADREVPTG EDIRVSSGST SSASGVTNGI SGMQSVLLSS KYLKAAQELL  180
DEVVNVGNGM RTELPKKGNG NQSKAMAESS MAAAGDGSVG GDQDSGKRAV ELSTAERQEI  240
QMKKGKLITM LDEVDQRYRQ YHRQMQMVIA SFEQAAGIGS ARTYTALALQ TISKQFRCLK  300
DAITNQIRAA NKSLGEEDCS GGKIEGSRLK YVDHQLRQQR ALQQLGMIQH NAWRPQRGLP  360
ERSVSVLRAW LFEHFLHPYP KDSDKHLLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL  420
EEIKENELNG SSEKISKSNE DSASKSTPPQ ERSPATDQNQ TNSTFNSKQE TSTNHIAAPP  480
SMSMSMSSAS TSPTNMVRNQ SGFSLIGSSE LDGITQGSPK KPRSTEIMHS PNSMMNHMDV  540
KPQEVSNEQV SMKFGDERQS RDGYSFMGGQ TNFIGNFGQY PIGEIGRFDT DQFTPRFSGN  600
SVSLSLGLPH CENLSLSGAH HQTFLPNQNI QLGRRVDHIG EPNDQFGTMN TSAPHSSAGF  660
ESIDIQNRKS CDGAFVTDIH RGGSGVVIRD EHGQFRAGAG KVLVQVTSPF HAELIALLEG  720
LKLAETLHIS KIVFETDCLL LQQAVSQPDT DLSTLGTIIA EVKEFLHRLG FRCQEESQLG  780
SPPDAEDDGV NDGAAGALPT VFRSSDSDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16359417563Homeobox protein Meis2
3k2a_B8e-16359417563Homeobox protein Meis2
4xrs_A7e-16359416158Homeobox protein Meis1
4xrs_B7e-16359416158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18314.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467196.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-170BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2P6RCJ70.0A0A2P6RCJ7_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004303380.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-135BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]