PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18306.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 371aa    MW: 39987.5 Da    PI: 7.0041
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18306.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof110.21e-341872761
                   zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                             +cprC  +ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  mrna18306.1-v1.0-hybrid 18 NCPRCGCSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 72
                             7***************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088428.2111771IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-251771IPR003851Zinc finger, Dof-type
PfamPF027015.9E-291871IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MESSGWKPND DHHHICPNCP RCGCSNTKFC YYNNYSLTQP RYFCKGCRRY WTKGGSLRNV  60
PVGGGCRKNR RGSRSLRLST NTTAANGSNN AHSGTTGHNS HGISNSLAPE STSSGVSNQD  120
APPRIDLAVV YANFLNQKPD SKSSDGSDHQ LPELPGEFDP GLDFSSCIAN MNINAGSGSS  180
IQLMEGNGLI GSIGCQSTVS ENCGTINDHM YFGGLDPLIV HHQKHQDLSS DLVQYTSSTH  240
ESIDFGLPPL PDQEQTLILS FLFSVDSPAT SLQPTLIGLE VFSEVVAQSS DPDLLDLLLH  300
VNAVPEASSV HLTREAPSST LEGGEIRDVR TLRAVRKSAS DGPKGLKRPK QRGKTKQQNY  360
KLEAGTILLF *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18306.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305582.10.0PREDICTED: dof zinc finger protein DOF3.2
TrEMBLA0A2P6RCL21e-162A0A2P6RCL2_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004305582.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-42Dof family protein