PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna18282.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 163aa MW: 18594 Da PI: 7.9861

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna18282.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.7	7.8e-16	69	127	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r+++NRe+ArrsR RKk++ieeL+ v++L N++L ++l +l + + + +e+ mrna18282.1-v1.0-hybrid 69 KRIKRMISNRESARRSRMRKKKQIEELQHQVDQLHITNRQLSEKLIQLLEGNQHVLQEN 127 99********************************************9999988888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-16	65	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	67	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.13E-12	69	119	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-12	69	125	No hit	No description
Pfam	PF00170	3.0E-14	69	127	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.70E-16	70	118	No hit	No description
PROSITE pattern	PS00036	0	72	87	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MQAVEVVENH SLLSLQNHTQ NPDSIPFYPT RIFSMSHIHD FSSNGSSLNN DTVFDEATAA 60 GEQGLTYEKR IKRMISNRES ARRSRMRKKK QIEELQHQVD QLHITNRQLS EKLIQLLEGN 120 QHVLQENAQL KERVSSLQVI LSDLISPLQR NVEMPPPTPK ST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna18282.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467186.1	1e-114	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A2P6RCM8	1e-103	A0A2P6RCM8_ROSCH; Putative transcription factor bZIP family
STRING	XP_004305578.1	1e-115	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13044	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	3e-32	basic leucine-zipper 70

Link Out ? help Back to Top
Phytozome	mrna18282.1-v1.0-hybrid