PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18204.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 205aa    MW: 22476.1 Da    PI: 10.4243
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18204.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000796991123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++ Fs+   L  H  +H
  mrna18204.1-v1.0-hybrid 69 YECKTCNRQFSSFQALGGHRASH 91
                             99**********99999998887 PP
2zf-C2H212.40.00046118140123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  Fs    L  H+r+H
  mrna18204.1-v1.0-hybrid 118 HECSICGLEFSLGQALGGHMRRH 140
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.99E-968140No hitNo description
PfamPF139121.3E-126893IPR007087Zinc finger, C2H2
SMARTSM003550.116991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7836996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM003550.18118140IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245118145IPR007087Zinc finger, C2H2
PfamPF139122.8E-9118141IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSKSTGKLLN RVLVQAIESF QTALLELLEK ASKLRRSFLS SVATHDSPQL LYRLETKFKK  60
CSSSPNHVYE CKTCNRQFSS FQALGGHRAS HKKPRTLPGG DDDLKSEAKL AQGKPKKHEC  120
SICGLEFSLG QALGGHMRRH RMMNAGFSSS APSAVVVASK IPVLMRSNSK RVMCLDMDLN  180
LTPLENDLKV LFGNMAPKVD TLVS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18204.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302781.11e-110PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD47e-34ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2P6RA881e-96A0A2P6RA88_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004302781.11e-110(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-35C2H2 family protein