PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18108.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 351aa MW: 39987.2 Da PI: 6.4009 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5e-06 | 90 | 113 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC f+ + G+C G +CkF+H+ mrna18108.1-v1.0-hybrid 90 KSILCEFYKA-GQCAKGFKCKFSHD 113 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.6E-4 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.065 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6 | 158 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.953 | 158 | 196 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 2.8E-11 | 215 | 286 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPMPD LSKTAAKKKK 60 EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG 120 EKIDIYSDKR QNETMEEWDQ ETLEKVVESR RKEYNMNKPT DIVCKYFLEA VERKQYGWFW 180 VCPNGGKDCH YRHALPPGYI LKSQMKALLE EESDKIPIEE EIESQRAKLK TSTPMTPELF 240 MQWKKKKIAE RDAGLASQMA ERAKNDHASL FVDDAEAYEK YQRHQESEVA EKVSNIADGG 300 EPKSSATADD DAKVTNIDDD VDDDDLDINE LNELEARLSK ATIQEPGTSA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18108.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302836.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 21-like | ||||
Swissprot | Q0JHZ2 | 1e-164 | C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11 | ||||
TrEMBL | A0A2P6RAH4 | 0.0 | A0A2P6RAH4_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004302836.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4419 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-150 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna18108.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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