PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18102.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 443aa    MW: 49163.8 Da    PI: 7.3924
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18102.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17107156155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  mrna18102.1-v1.0-hybrid 107 SQYRGVTFYRRTGRWESHIWD------NgKQVYLGGFDTAHSAARAYDRAAIKFRG 156
                              78*******************......44************************998 PP
2AP245.61.7e-14199249155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ k +g
  mrna18102.1-v1.0-hybrid 199 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEIEAARAYDQAAIKCHG 249
                              89********.7******...5...334336**********99***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-16107165IPR016177DNA-binding domain
PfamPF008472.0E-10107156IPR001471AP2/ERF domain
CDDcd000186.17E-24108163No hitNo description
Gene3DG3DSA:3.30.730.101.1E-17108164IPR001471AP2/ERF domain
SMARTSM003809.5E-32108170IPR001471AP2/ERF domain
PROSITE profilePS5103217.991108164IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17199257IPR016177DNA-binding domain
PfamPF008475.8E-10199249IPR001471AP2/ERF domain
CDDcd000181.18E-25199256No hitNo description
Gene3DG3DSA:3.30.730.101.7E-16200257IPR001471AP2/ERF domain
PROSITE profilePS5103215.303200257IPR001471AP2/ERF domain
SMARTSM003803.4E-32200263IPR001471AP2/ERF domain
PRINTSPR003671.3E-5201212IPR001471AP2/ERF domain
PRINTSPR003671.3E-5239259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLDLNLNFFT SDMDTSSNDD SSSSTTLNFL DFQSDVAAEP DHHPSSDSRT IQLFPPPAKQ  60
WLGLSSASST TYRYRASPPP PPPPPQEQMI APLSVKKSRR GPRSRSSQYR GVTFYRRTGR  120
WESHIWDNGK QVYLGGFDTA HSAARAYDRA AIKFRGTEAD INFSVGDYDE DIKQMSNYTK  180
EEFVQILRRQ STGFARGSSK YRGVTLHKCG RWEARMGQLL GKKYIYLGLF DTEIEAARAY  240
DQAAIKCHGS EAVTNFNPIL YDGEIEAEPN NAGMDGSLDL NLGIAPPLAS ECPNENINLS  300
SFPFPLGRND LPIHMRSRNE NSVPGFPATM RTQLPRGLMV ASAEPPLTSN MNSNFFPIHM  360
ERATEKSMDA NSFRNWAWQM QGHNDGATPM PLFSAAASSG FPSSTPPSSA AVPPLHFPNT  420
SFLQRHFSPS FTNSTPHFYC RS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18102.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3673651e-144AF367365.1 Fragaria x ananassa transcription factor (AP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305250.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ8H4431e-100AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A3S8T9590.0A0A3S8T959_FRAAN; Transcription factor AP216
STRINGXP_004305250.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.37e-92related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]