PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18094.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 166aa MW: 18784.3 Da PI: 8.4532 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.7 | 1.8e-14 | 15 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHH.HHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELS.vLCdaevaviifsstgklyey 49 k+ien r vtf+kR+ gi K +EL +LC+aev v++fs+ k y y mrna18094.1-v1.0-hybrid 15 KKIENAEDRLVTFTKRKSGIYNKCNELAaTLCGAEVGVVVFSEFEKPYSY 64 68*************************559************98887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.0E-21 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.778 | 7 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-22 | 8 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-10 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-17 | 16 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-10 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MASKKTRGKQ KIEIKKIENA EDRLVTFTKR KSGIYNKCNE LAATLCGAEV GVVVFSEFEK 60 PYSYGHPSIE SIADRFLNQQ SPQETNGDNI ASHVVGAYKQ ARITEILNKY NELQEKLSNE 120 QLREKELQQR EKARASEGLG WWQRPIKELD LEGTKENVCF LPAPP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18094.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305560.1 | 1e-120 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2P6RCY5 | 1e-74 | A0A2P6RCY5_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004305560.1 | 1e-119 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-31 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | mrna18094.1-v1.0-hybrid |