PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna18029.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 187aa MW: 21408.7 Da PI: 10.3593

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna18029.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.8	1.2e-17	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i ++s r+ tf kR++g++KK +ELS+LCd++++ ii+s+ mrna18029.1-v1.0-hybrid 11 ITDDSARKATFKKRKKGLMKKVSELSTLCDVNACAIIYSP 50 8899***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.6E-25	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.535	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.03E-21	2	83	No hit	No description
PRINTS	PR00404	3.1E-10	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.07E-25	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.5E-19	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MARKKVKLAY ITDDSARKAT FKKRKKGLMK KVSELSTLCD VNACAIIYSP YDSQPEVWPS 60 PQGVQSVLAR FNSMPSMDQS KKMFNQDTYL RERIGKVQEQ LKNQKKENRK KEIERVMFQS 120 LTGKSLQGLM HMDLKDLDRT IDQHLEQIQS RVKSITEEAL KNQSQEQGAS VAADHKPDHV 180 IKRLTI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAYITDDSARKATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna18029.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467153.1	1e-137	PREDICTED: agamous-like MADS-box protein AGL80
Refseq	XP_011467154.1	1e-137	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	9e-51	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A2P6R7W1	3e-76	A0A2P6R7W1_ROSCH; Putative transcription factor MADS-type1 family
STRING	XP_004305556.1	1e-136	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-53	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	mrna18029.1-v1.0-hybrid

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]