PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18002.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 657aa    MW: 75456.9 Da    PI: 9.8459
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18002.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.87.3e-1346108164
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCka 64 
                              kfYn+YA+++GFsvrksk++k+  ng + ++++vC keg+++e+ ++ +e e+r r +trtg  a
  mrna18002.1-v1.0-hybrid  46 KFYNDYARKAGFSVRKSKETKK--NGMVNWKRYVCFKEGETDETWRNnNEVEERDRRNTRTGAVA 108
                              6***************998877..9***************9998777466778888899998666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-1146109IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.2186223IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-8193219IPR007527Zinc finger, SWIM-type
SMARTSM005756.4E-8198225IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MENMEIISEE LMLFRGDTQM AYIPDVEDGM KPKAEQRFDS LDAVYKFYND YARKAGFSVR  60
KSKETKKNGM VNWKRYVCFK EGETDETWRN NNEVEERDRR NTRTGAVAHQ RHEELVEDHK  120
DLNETPILKL GMPMEVQMVH LYTKKYFQYF QVQLHDGNGY FVDVVMEDDI RCVYKTKRVF  180
AKNLRMRTLV HDKVSNIVTC SCRMFEFEGI PCRHILVLLR LKHIMELPKD YILRRWTRFS  240
RVHKQTSQGQ HGADSSLIMR HNGMFKIASS LIDEAAISTE GTELVKKSFE GLLEQIKKLN  300
LSVGQSSTKN STAGTSQENR FLDPFQVKTK GSGLRLTSWR DRKGKVRRRS GFWATTEKRR  360
IGGDSGNDSL PSPAIRVWVS GETSLVNLQR VFWKRRRRGE ESGTTVVLSG DRSLGAGYVC  420
EKDDEQKWRR REGDVLGLVI HVHLVVDVFV LEGLTITTKQ NILPCEPGPI IEVHNHASSS  480
LSPNPKARHL SSPGTPCQAQ CPTPLSCPKS PAPNLTNPRC NPNHNSQMPP ILIHQLPRPS  540
TTPSKPAHSP LNQDLIYYDP IWTDLDPSLE TRQKRVQKNP DRGESQKNPD KRESLDIREI  600
EREKKKAEET ERKETGKTQK SAIEREKKVL EKVREKREQT LDSDPRPKSS IQIRAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18002.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0126452e-95HM012645.1 Fragaria vesca clone VT_710B_R T-DNA insertion flanking sequence.
GenBankHM0126462e-95HM012646.1 Fragaria vesca clone VT_710A_R T-DNA insertion flanking sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_004305530.11e-169(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.23e-20FAR1-related sequence 3