PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18002.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 657aa MW: 75456.9 Da PI: 9.8459 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.8 | 7.3e-13 | 46 | 108 | 1 | 64 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCka 64 kfYn+YA+++GFsvrksk++k+ ng + ++++vC keg+++e+ ++ +e e+r r +trtg a mrna18002.1-v1.0-hybrid 46 KFYNDYARKAGFSVRKSKETKK--NGMVNWKRYVCFKEGETDETWRNnNEVEERDRRNTRTGAVA 108 6***************998877..9***************9998777466778888899998666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.0E-11 | 46 | 109 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.2 | 186 | 223 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.8E-8 | 193 | 219 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.4E-8 | 198 | 225 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
MENMEIISEE LMLFRGDTQM AYIPDVEDGM KPKAEQRFDS LDAVYKFYND YARKAGFSVR 60 KSKETKKNGM VNWKRYVCFK EGETDETWRN NNEVEERDRR NTRTGAVAHQ RHEELVEDHK 120 DLNETPILKL GMPMEVQMVH LYTKKYFQYF QVQLHDGNGY FVDVVMEDDI RCVYKTKRVF 180 AKNLRMRTLV HDKVSNIVTC SCRMFEFEGI PCRHILVLLR LKHIMELPKD YILRRWTRFS 240 RVHKQTSQGQ HGADSSLIMR HNGMFKIASS LIDEAAISTE GTELVKKSFE GLLEQIKKLN 300 LSVGQSSTKN STAGTSQENR FLDPFQVKTK GSGLRLTSWR DRKGKVRRRS GFWATTEKRR 360 IGGDSGNDSL PSPAIRVWVS GETSLVNLQR VFWKRRRRGE ESGTTVVLSG DRSLGAGYVC 420 EKDDEQKWRR REGDVLGLVI HVHLVVDVFV LEGLTITTKQ NILPCEPGPI IEVHNHASSS 480 LSPNPKARHL SSPGTPCQAQ CPTPLSCPKS PAPNLTNPRC NPNHNSQMPP ILIHQLPRPS 540 TTPSKPAHSP LNQDLIYYDP IWTDLDPSLE TRQKRVQKNP DRGESQKNPD KRESLDIREI 600 EREKKKAEET ERKETGKTQK SAIEREKKVL EKVREKREQT LDSDPRPKSS IQIRAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18002.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM012645 | 2e-95 | HM012645.1 Fragaria vesca clone VT_710B_R T-DNA insertion flanking sequence. | |||
GenBank | HM012646 | 2e-95 | HM012646.1 Fragaria vesca clone VT_710A_R T-DNA insertion flanking sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_004305530.1 | 1e-169 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 3e-20 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna18002.1-v1.0-hybrid |