PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17937.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 32732.1 Da PI: 7.1003 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.3e-10 | 210 | 253 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ + K++ +++LekA+ Y+k Lq mrna17937.1-v1.0-hybrid 210 IAAKNRRERISERLKILQELVPNgC------KVDLVTMLEKAISYVKFLQ 253 5679*******************77......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.5E-13 | 202 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.684 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 204 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.12E-11 | 209 | 257 | No hit | No description |
Pfam | PF00010 | 4.1E-7 | 211 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MALAKDRMPR DSLQHQLPSS DHQHHRLSNN GFVFRSAASA TSCYQADDDH DQVAAGHSVI 60 NFKSNDYTSS FTHDNSASLL SFEKTNNSIT QDHDSYNCIN SVDPVRHSGD FNCFQTASTY 120 NSSSSNPSNE GHGSELGSAY GWLYSDATLM AESFPEPETQ VGASFQKRPH KGENMQPLKR 180 QCTSDVSAAA ATTKKPKPKS SSPSKDPQSI AAKNRRERIS ERLKILQELV PNGCKVDLVT 240 MLEKAISYVK FLQLQVKVLA TDEFWPVQGG KAPDISQVKE AIDAILSSQR DTSSSSKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17937.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305526.1 | 0.0 | PREDICTED: putative transcription factor bHLH086 | ||||
TrEMBL | A0A2P6RGR8 | 1e-166 | A0A2P6RGR8_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004305526.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4937 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 2e-59 | RHD SIX-LIKE 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna17937.1-v1.0-hybrid |