PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17937.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 299aa    MW: 32732.1 Da    PI: 7.1003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17937.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10210253755
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++ ++RR+ri +++  L+el+P+ +      K++ +++LekA+ Y+k Lq
  mrna17937.1-v1.0-hybrid 210 IAAKNRRERISERLKILQELVPNgC------KVDLVTMLEKAISYVKFLQ 253
                              5679*******************77......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-13202262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11204260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-11209257No hitNo description
PfamPF000104.1E-7211253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALAKDRMPR DSLQHQLPSS DHQHHRLSNN GFVFRSAASA TSCYQADDDH DQVAAGHSVI  60
NFKSNDYTSS FTHDNSASLL SFEKTNNSIT QDHDSYNCIN SVDPVRHSGD FNCFQTASTY  120
NSSSSNPSNE GHGSELGSAY GWLYSDATLM AESFPEPETQ VGASFQKRPH KGENMQPLKR  180
QCTSDVSAAA ATTKKPKPKS SSPSKDPQSI AAKNRRERIS ERLKILQELV PNGCKVDLVT  240
MLEKAISYVK FLQLQVKVLA TDEFWPVQGG KAPDISQVKE AIDAILSSQR DTSSSSKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17937.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305526.10.0PREDICTED: putative transcription factor bHLH086
TrEMBLA0A2P6RGR81e-166A0A2P6RGR8_ROSCH; Putative transcription factor bHLH family
STRINGXP_004305526.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-59RHD SIX-LIKE 1