PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17908.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 28397.9 Da PI: 9.6193 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 7.2e-12 | 122 | 206 | 1 | 78 |
EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+ltpsdv +rl ++k+++++ + +e+++++ +d+ g+++ +k++ + ++ +vlt+GWk F k+++L e mrna17908.1-v1.0-hybrid 122 FEKQLTPSDVRDGqSRLAMSKEYVQKRlmpllneneD--LNEGIDVMTYDLAGKEYPMKFRTWVSK-IHVLTAGWKAFRKDHKLVE 204 99********987799********999***9988543..44899****************999987.689**************98 PP T- CS B3 77 gD 78 + mrna17908.1-v1.0-hybrid 205 NQ 206 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-15 | 122 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-14 | 122 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-13 | 122 | 226 | No hit | No description |
Pfam | PF02362 | 1.1E-7 | 122 | 206 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MISLTDEQDI KAAFNLCFMK HKIIDSEEEI QKLEDTKLKS LGQTSKYPNA EAKPSAQEIR 60 KKEEFTVNLQ LGLKRKAVQV EAMYVAQAAK PHEGLFYGNY TPPNLPPVPS LHQFIGICSE 120 PFEKQLTPSD VRDGQSRLAM SKEYVQKRLM PLLNENEDLN EGIDVMTYDL AGKEYPMKFR 180 TWVSKIHVLT AGWKAFRKDH KLVENQHWVT VWMFRNIATG KLCFVIEVRK LPVFDAIKRR 240 RTRQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17908.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466877.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A2P6RSD2 | 1e-133 | A0A2P6RSD2_ROSCH; Putative transcription factor B3-Domain family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 5e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna17908.1-v1.0-hybrid |