PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17881.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 297aa    MW: 33300.1 Da    PI: 6.692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17881.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09156196954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++Le+A++Y+k L
  mrna17881.1-v1.0-hybrid 156 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLEEAIRYVKFL 196
                              699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12152207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-10153201No hitNo description
PfamPF000101.4E-6157196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDHTNYLNNQ LGNNLVSAAG DHLEDHVRME DPIQLHHHHH QHQISYDSVW PNFPLQLHHQ  60
VPSSSSTHLH YDQFGHHDHD HHHHQLVLPG NYNNFMDQED IHHEEEPGEE EEELGAMKEM  120
MYKIAAMQPV DIDPATIRKP KRRNVRISDD PQSVAARHRR ERISEKIRIL QRLVPGGTKM  180
DTASMLEEAI RYVKFLKRQI RLLQQSSHHH PQPCINVNNT GVLLSSIPSA SNAAALAGGG  240
GTALDWLQPP PIHPRSAATS SSTETPTTRA ALGFTAFGVS RGDVAALSFN HEVLSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17881.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289411.10.0PREDICTED: transcription factor HEC3
TrEMBLA0A2P6RSA11e-131A0A2P6RSA1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004289411.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.11e-47bHLH family protein