PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17829.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 326aa    MW: 37598.1 Da    PI: 7.6017
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17829.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.52.3e-15957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k+i+nk    ++f+kRrng++ KA+  + L +ae+avi+fs+ g++y +
  mrna17829.1-v1.0-hybrid  9 KKISNKNYLMTSFTKRRNGLFHKASQFCRLSGAEIAVIVFSPGGRVYLF 57
                             689*******************************************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.572161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-22171IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-24160IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-12323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRRKIEIKK ISNKNYLMTS FTKRRNGLFH KASQFCRLSG AEIAVIVFSP GGRVYLFGHP  60
SADSVIDRYD IRTEDNNNEG TREFPYTIDD EEDDAHDDDM SSSELANEAA DGKHELGKAG  120
RFWWDNLPIE DMELKQLEQY KSCLEVLRND LAYKLYDRKR RDSHTKDFLS LIGSSSSGIA  180
DMELKQHEQY KGCSSEVFRN EMAYELYETK RRESQTRDFL SLIGENHKPR WNFYRSPYRD  240
SDVGMGLRLR TFLRWLIHSG ARSHHCQQFC FCGNWLLRTN EFKSNVDGAY VQQLPKGGLA  300
FVVFATVQQG HLAKPFGPSR PSSDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161DRKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17829.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305439.11e-169PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P6RUH84e-96A0A2P6RUH8_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004305439.11e-168(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-26AGAMOUS-like 62