PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17805.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 367aa    MW: 40307.1 Da    PI: 6.8972
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17805.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.81.7e-3322150289
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                              +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++                      
  mrna17805.1-v1.0-hybrid  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLAELppwhptgvaatategeapngag 107
                              79**************************************************************9988888877766655444333 PP

                      TCP  66 ......ssssaseceaesssssasnsssg...........................k 89 
                                    s        ae+s+ss      g                           +
  mrna17805.1-v1.0-hybrid 108 tsemviS--------AEQSESS------GynfqlqrqigdntdhndsnfipqsldsD 150
                              2222221........2222222......12222222232333223333444444432 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3022155IPR005333Transcription factor, TCP
PROSITE profilePS5136933.0412482IPR017887Transcription factor TCP subgroup
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGMKSVGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKTAID KLAELPPWHP TGVAATATEG EAPNGAGTSE MVISAEQSES  120
SGYNFQLQRQ IGDNTDHNDS NFIPQSLDSD TIADTMKSFF PTSSAASTIN FQSYPSDIIS  180
RTTNLNPNQD LGLSLHSFQD QGLIHHTQQS HQDTTHHHND QIQTLFAVPA TAGFDSSTYQ  240
RMVAWSSDTS SHENNNRGLF FNNMSALPHQ QQQALMGQQH SSAFAQRGTL QSSFTPSIRS  300
WSDEIQMASQ RTQHPIHHSS IFGTRFASDG LPVFCIPTTR IHGEDADNAV VSDRPSSTSS  360
PNSNHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-222982154Putative transcription factor PCF6
5zkt_B2e-222982154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17805.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303161.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1Q1NA450.0A0A1Q1NA45_FRAVE; PCF transcription factor 13
STRINGXP_004303161.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-70TCP family protein