PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17805.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 367aa MW: 40307.1 Da PI: 6.8972 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.8 | 1.7e-33 | 22 | 150 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ mrna17805.1-v1.0-hybrid 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLAELppwhptgvaatategeapngag 107 79**************************************************************9988888877766655444333 PP TCP 66 ......ssssaseceaesssssasnsssg...........................k 89 s ae+s+ss g + mrna17805.1-v1.0-hybrid 108 tsemviS--------AEQSESS------GynfqlqrqigdntdhndsnfipqsldsD 150 2222221........2222222......12222222232333223333444444432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-30 | 22 | 155 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.041 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGMKSVGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKTAID KLAELPPWHP TGVAATATEG EAPNGAGTSE MVISAEQSES 120 SGYNFQLQRQ IGDNTDHNDS NFIPQSLDSD TIADTMKSFF PTSSAASTIN FQSYPSDIIS 180 RTTNLNPNQD LGLSLHSFQD QGLIHHTQQS HQDTTHHHND QIQTLFAVPA TAGFDSSTYQ 240 RMVAWSSDTS SHENNNRGLF FNNMSALPHQ QQQALMGQQH SSAFAQRGTL QSSFTPSIRS 300 WSDEIQMASQ RTQHPIHHSS IFGTRFASDG LPVFCIPTTR IHGEDADNAV VSDRPSSTSS 360 PNSNHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17805.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303161.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
TrEMBL | A0A1Q1NA45 | 0.0 | A0A1Q1NA45_FRAVE; PCF transcription factor 13 | ||||
STRING | XP_004303161.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-70 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna17805.1-v1.0-hybrid |