PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17762.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 294aa    MW: 32863.9 Da    PI: 9.2843
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17762.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.52.8e-32461971128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.........vikev.diykvePwdLpkkvkaeekewyfFskrdkky 68 
                              lp+G++F+Ptd+e++ ++L+ kv +++        +   +         +i+   +i++++P++Lp  v+++    +fF++ +k+y
  mrna17762.1-v1.0-hybrid  46 LPAGVKFDPTDQEVL-QHLEGKVLSSTdiaagnklH---HhplidqfipTIEGEnGICYTHPHKLP-GVSKDGLVRHFFHRPSKAY 126
                              799**********99.99****99999766665540...15556665544666657**********.555666688********** PP

                      NAM  69 atgkrknra..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +tg+rk+r+            + +W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  mrna17762.1-v1.0-hybrid 127 TTGSRKRRKvhtdrdssseGGETRWHKTGKTRPVFA-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 197
                              ********7577777664433678************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3740216IPR003441NAC domain
PROSITE profilePS5100531.9346216IPR003441NAC domain
PfamPF023654.8E-1547197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTHCNDLGQE DPRLIAKDGL TTRTCPSCGY QIKYQQQAGI QNLPGLPAGV KFDPTDQEVL  60
QHLEGKVLSS TDIAAGNKLH HHPLIDQFIP TIEGENGICY THPHKLPGVS KDGLVRHFFH  120
RPSKAYTTGS RKRRKVHTDR DSSSEGGETR WHKTGKTRPV FAGGKVKGYK KILVLYTNYG  180
KQRKPEKTNW VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGNSGMKDF NNNSAAKVLM  240
NGQSEHSEAL VQYCNNVNSF ISFDQNGQDR SSSNPQIIPP HFPLHDGSFV SLK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17762.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305430.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotO494591e-114NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2P6SQM50.0A0A2P6SQM5_ROSCH; Putative transcription factor NAM family
STRINGXP_004305430.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-117NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]