PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17750.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 586aa MW: 64206.6 Da PI: 6.8841 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.4 | 1.4e-27 | 195 | 249 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ mrna17750.1-v1.0-hybrid 195 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 249 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.152 | 192 | 251 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 193 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-18 | 193 | 252 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-26 | 195 | 249 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.9E-8 | 198 | 247 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MLILSPLREQ HKDENRGGDQ MESFSIGTNV VDFSEFSGGN LLDSIDFDDL FIGIDSEMDV 60 LPDLEMDSEM LAEFSVSAGE ESDLNTSPAS LEKWDDEENK ASIKTSTAEE REDDHHQKVD 120 SSGSGTTDFK YSSSDNSSHG GGGGGGEEIV SKRDESAGGA VHNNTSSSPK ETTDKGHRKS 180 SSSSAQSKSS HGKRKVKVDW TPELHRRFVQ AVEQLGVDKA VPSRILELMG IDCLTRHNIA 240 SHLQKYRSHR KHLLAREAEA ASWTQRRQLY GSAAAAGGGG VGVKRPSSEI GPWLAPPTMG 300 FPPPMTPMHQ QPHHGHHHHH HHHHQFRPLH VWGHPTVDQS MMHMWPPKHL APFPSPQQQP 360 SWPPAPPPPP DTSYWHHHHQ RAPPNNAVLT PGTPCFPRQI ATSHTPPSTR FPVSPVPGIP 420 PHHGNMYKLD PAGLGVPGQS GPHPLVDFQP SKESIDAAIG DALSKPWLPL PLGLKPPSTD 480 SVMGELQRQG IPKNPVQHDR TKHVEVDHHF IKEKLDAKII SFPFVPTEEQ LAGADVRTAL 540 KVRTSLLSPP YGTGEGAPLP QRTPAASPTT FHLWRVRRIP VFQPD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-15 | 192 | 247 | 2 | 57 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17750.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095503 | 1e-62 | BT095503.1 Soybean clone JCVI-FLGm-19O16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303114.1 | 0.0 | PREDICTED: probable transcription factor GLK1 isoform X2 | ||||
TrEMBL | A0A2P6RTZ6 | 0.0 | A0A2P6RTZ6_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004303114.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 4e-72 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna17750.1-v1.0-hybrid |