PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17724.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 219aa MW: 24451.5 Da PI: 6.3957 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 22.4 | 3.4e-07 | 9 | 52 | 1 | 42 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkkleleev.ikevdiykv 42 lp+G+rF P+++el+ +yL +k v+g +l+++ + + e+d+y mrna17724.1-v1.0-hybrid 9 LPVGYRFAPNEQELLLCYLYNKqVNGARLPCNMHvLMECDLYGE 52 799****************9985677776654333999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-8 | 6 | 51 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
METGRDPGLP VGYRFAPNEQ ELLLCYLYNK QVNGARLPCN MHVLMECDLY GEEEEWKQAS 60 SYIEDDIVRI CYMEEAEREA YPSIIMHDHH SVTDGLDERN ERKIIGCGRP HHFTVRISVR 120 STPYGAARGR ASTPADSSSF PDHFPSPTSP PNSSFPARST FFEVLGDLAG KLEKNGLAGD 180 GKWSGKLLEF VGVEARPRTA PYGGEWTKIR TVKRCGRP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 214 | TVKRC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17724.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | mrna17724.1-v1.0-hybrid |