PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17723.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 26014.4 Da PI: 6.6069 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.5e-09 | 28 | 75 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E++RR++++ +++L +llP++ +++ +s e +A++YIk L+ mrna17723.1-v1.0-hybrid 28 RVIEKNRRNHMKILYSQLNSLLPNQ--HSKEPVSLPEQIDEAINYIKTLE 75 579*********************7..26666***************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.687 | 22 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-11 | 23 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.49E-5 | 24 | 75 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-10 | 27 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-6 | 28 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGILVPDDAK QVMENTQLTT SGSKIERRVI EKNRRNHMKI LYSQLNSLLP NQHSKEPVSL 60 PEQIDEAINY IKTLESNMQK LKQKRDNLKI GRKRSYELCS SSSSTRSAAA TSTAKSPQIQ 120 IHEIGSTLEV VLSTGLHNQF IFYDIIRILD QEQADVVHAS FSASGDSILH LVRAEMGNLI 180 LDFGAAKITE KLKRIVYGSA SDEELQHDDH NQDYYLWDFQ IHPQMWDF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 93 | KRDNLKIGRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17723.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303146.1 | 1e-170 | PREDICTED: transcription factor bHLH118-like isoform X2 | ||||
TrEMBL | A0A2P6RTX4 | 1e-135 | A0A2P6RTX4_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004303146.1 | 1e-169 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 8e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna17723.1-v1.0-hybrid |