PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17721.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 417aa MW: 48614.1 Da PI: 9.6057 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.6 | 2.6e-19 | 6 | 145 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.........leleevikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrkn 75 +GfrF Ptdeel++++L +k + ++ ++ +++++evd+y +vePw++ +++ + ++++ fF++++ ++ g r + mrna17721.1-v1.0-hybrid 6 VGFRFYPTDEELISYFLDNKNNVHTtaqvpsmatFNYNNIMPEVDLYgDVEPWQIWETYGGselYDQDMLFFTQHKMVNPDGLRIQ 91 7*******************88888778877766666668*****99457*****743322222556889**************** PP NAM 76 r.atksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 r + + g+W++ k ++++ ++ +g k+ + + k+ + ++ W ++ey+l mrna17721.1-v1.0-hybrid 92 RkVGSGGTWSEGEPGKLIFDSklMQKPIGQKRKFRYEKK--GSEHNGCWYLEEYSL 145 *5556889**99999999988777788********9843..3335889******87 PP | |||||||
2 | NAM | 75.5 | 1.2e-23 | 183 | 315 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atks 80 p+GfrFhPtd++l++++L+kkv+++ + ++++ e+d++ ++ePw++ + ++ ++++++fF+k ++++ +++r r + +s mrna17721.1-v1.0-hybrid 183 PVGFRFHPTDQQLISYFLHKKVTEEAslYSYKNIVCEFDLFgSTEPWEIWNmygGHELRNQDLFFFTKLKRASLKSSRILRkIGSS 268 89********************9999876777789999987367*****74233333366689****************9955669 PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+W++t +k ++++ k++++g ++ L + ++ + ++ +W ++ey+l mrna17721.1-v1.0-hybrid 269 GTWSETDASKLIKDEaKQKHIGRRRKLRYE--SKCSKQHGHWYLDEYSL 315 *************9877788********98..44444689*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.116 | 4 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.1E-19 | 5 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-12 | 6 | 145 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-25 | 179 | 329 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.689 | 182 | 330 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-16 | 183 | 315 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MSSDLVGFRF YPTDEELISY FLDNKNNVHT TAQVPSMATF NYNNIMPEVD LYGDVEPWQI 60 WETYGGSELY DQDMLFFTQH KMVNPDGLRI QRKVGSGGTW SEGEPGKLIF DSKLMQKPIG 120 QKRKFRYEKK GSEHNGCWYL EEYSLLSMNS ASYVLCRLRQ NIRKGRKRKE ISLRQESPMN 180 YAPVGFRFHP TDQQLISYFL HKKVTEEASL YSYKNIVCEF DLFGSTEPWE IWNMYGGHEL 240 RNQDLFFFTK LKRASLKSSR ILRKIGSSGT WSETDASKLI KDEAKQKHIG RRRKLRYESK 300 CSKQHGHWYL DEYSLLDSES DYVICRLRKN DKSSPPSSEW NGNKRTYSAL CQESKETLSS 360 VTNKKLLRKQ SNETMNVNNK KNNTLSDQTI AQTKRMQPGT KIKLFGVEID SDLKYV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 169 | RKGRKRKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17721.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466903.1 | 0.0 | PREDICTED: uncharacterized protein LOC105352209 | ||||
TrEMBL | A0A2P6RTY0 | 1e-60 | A0A2P6RTY0_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_008221120.1 | 9e-47 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12591 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33280.1 | 1e-14 | NAC domain containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | mrna17721.1-v1.0-hybrid |