PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna17613.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 280aa MW: 32393.3 Da PI: 6.101

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna17613.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62	1.4e-19	26	113	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt++e+ +Li+a++e++ +lrrg+lk+ +Weev+ + + +++++qC++k+e+l++r++ +k++ ++ s +py mrna17613.1-v1.0-hybrid 26 WTHEETVHLIQAYQEKWYELRRGQLKASQWEEVAVTVaarcgyDYTEQSKTATQCRHKMEKLRQRHRSVKKRLGRS---FGSGWPY 108 *********************************998777776667789********************84...5557* PP trihelix 82 fdqle 86 fd +e mrna17613.1-v1.0-hybrid 109 FDLME 113 **998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.2E-20	25	115	No hit	No description
PROSITE profile	PS50090	6.284	25	88	IPR017877	Myb-like domain
SMART	SM00595	2.2E-5	33	120	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MAAPPSPAAS PSASPIFIRK PQPVPWTHEE TVHLIQAYQE KWYELRRGQL KASQWEEVAV 60 TVAARCGYDY TEQSKTATQC RHKMEKLRQR HRSVKKRLGR SFGSGWPYFD LMERLEQGPM 120 PISSRRPYQE SDEEEEVEEE HDVGGGDEVD EEEEDNYRKL QSLDYILRRP AIVNRFSSRA 180 TREGQFRNSA GSKRAREAAG DEGYYGDVVD GQRGTEMVAE LATEIRAFAK RLIGVENMRM 240 EIMRETERCR LEMENRRIDM IRQSQRKIVD SIDRAFALD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna17613.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292373.1	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A2P6PUD4	1e-155	A0A2P6PUD4_ROSCH; Putative transcription factor MYB family
STRING	XP_004292373.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	9e-44	Trihelix family protein

Link Out ? help Back to Top
Phytozome	mrna17613.1-v1.0-hybrid