PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17610.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 629aa MW: 71515.5 Da PI: 4.84 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.9 | 2.7e-25 | 12 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 lp Gf F Ptd el+ +yL +kv gk+++ ++ + e+++yk ePwdL +++ a + +++y F++ +kk+++g++ +r+t sg+ mrna17610.1-v1.0-hybrid 12 LPSGFNFLPTDLELLGYYLLNKVLGKPFKYDSRvMIELNLYKEEPWDLWNRFGArlnHGEDLYIFTELKKKSNNGSNVSRTTGSGT 97 699************************888655499************75333322256789************************ PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk + +v + +++ g k + + ++ + e +W+m ey+l mrna17610.1-v1.0-hybrid 98 WKGDTAEAKVSE-DKKILGSWKRFRYVPNEPN--ETGSWIMVEYKL 140 ******9***99.9999*********954444..489*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-31 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.281 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-14 | 13 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MASSSCVSGF NLPSGFNFLP TDLELLGYYL LNKVLGKPFK YDSRVMIELN LYKEEPWDLW 60 NRFGARLNHG EDLYIFTELK KKSNNGSNVS RTTGSGTWKG DTAEAKVSED KKILGSWKRF 120 RYVPNEPNET GSWIMVEYKL DDSLNPKSCR GRDLVLSRIR KDRKRKLIED QMNDTIQCPC 180 TKVARVEETN DVKSTYGIRP ILNDDTNLPA SFTQCLASEE EQQLQQQEEL DSNKMLEKQQ 240 DPQLLPSPSH FHKQHPNAVI SHQPNNLGIP YFHDQQQQLL GDVLTVSNNH DNFQVNDREH 300 ESYVMSTYEN QILNEDNNTM ASCFTRWLSS DDEEQQQPQQ EVQPNKMCEG QQSSVSFEHV 360 EQQLQQEDQQ LLPSTSHDHE RQQILGNHLM GSRDNEPQNA RPHPDSLTSQ EPNHFDIPTE 420 IDEGQFNHYF TVNELFSDEL SDSAALKFSS LDDDVFNGID LTAIAHPGAP RTRPSPPSIL 480 KKSKVRVKWT AEMDRCAEYA LSIDVHIPSH CGTIDITGSN ASQQSGLGLA QKIWVAKQLP 540 PIPRVTQQQQ QLLGDDLMVS NNHDNFQEQQ QPQQQEVEPN NMCEGQQSLQ QILGNLLMAS 600 KDNEPGMLNL TRIASRVISQ TILAFPLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-17 | 10 | 140 | 13 | 140 | Stress-induced transcription factor NAC1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 166 | RKDRKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17610.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU024848 | 3e-35 | EU024848.1 Fragaria vesca subsp. americana clone fosmid 38H02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459730.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34144 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 5e-23 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | mrna17610.1-v1.0-hybrid |