PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17610.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 629aa    MW: 71515.5 Da    PI: 4.84
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17610.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.92.7e-25121401128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 
                              lp Gf F Ptd el+ +yL +kv gk+++ ++  + e+++yk ePwdL +++ a   + +++y F++ +kk+++g++ +r+t sg+
  mrna17610.1-v1.0-hybrid  12 LPSGFNFLPTDLELLGYYLLNKVLGKPFKYDSRvMIELNLYKEEPWDLWNRFGArlnHGEDLYIFTELKKKSNNGSNVSRTTGSGT 97 
                              699************************888655499************75333322256789************************ PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              Wk    + +v + +++  g  k + +  ++ +  e  +W+m ey+l
  mrna17610.1-v1.0-hybrid  98 WKGDTAEAKVSE-DKKILGSWKRFRYVPNEPN--ETGSWIMVEYKL 140
                              ******9***99.9999*********954444..489*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-316161IPR003441NAC domain
PROSITE profilePS5100531.28112162IPR003441NAC domain
PfamPF023651.9E-1413140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MASSSCVSGF NLPSGFNFLP TDLELLGYYL LNKVLGKPFK YDSRVMIELN LYKEEPWDLW  60
NRFGARLNHG EDLYIFTELK KKSNNGSNVS RTTGSGTWKG DTAEAKVSED KKILGSWKRF  120
RYVPNEPNET GSWIMVEYKL DDSLNPKSCR GRDLVLSRIR KDRKRKLIED QMNDTIQCPC  180
TKVARVEETN DVKSTYGIRP ILNDDTNLPA SFTQCLASEE EQQLQQQEEL DSNKMLEKQQ  240
DPQLLPSPSH FHKQHPNAVI SHQPNNLGIP YFHDQQQQLL GDVLTVSNNH DNFQVNDREH  300
ESYVMSTYEN QILNEDNNTM ASCFTRWLSS DDEEQQQPQQ EVQPNKMCEG QQSSVSFEHV  360
EQQLQQEDQQ LLPSTSHDHE RQQILGNHLM GSRDNEPQNA RPHPDSLTSQ EPNHFDIPTE  420
IDEGQFNHYF TVNELFSDEL SDSAALKFSS LDDDVFNGID LTAIAHPGAP RTRPSPPSIL  480
KKSKVRVKWT AEMDRCAEYA LSIDVHIPSH CGTIDITGSN ASQQSGLGLA QKIWVAKQLP  540
PIPRVTQQQQ QLLGDDLMVS NNHDNFQEQQ QPQQQEVEPN NMCEGQQSLQ QILGNLLMAS  600
KDNEPGMLNL TRIASRVISQ TILAFPLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-171014013140Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159166RKDRKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17610.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0248483e-35EU024848.1 Fragaria vesca subsp. americana clone fosmid 38H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459730.10.0PREDICTED: NAC domain-containing protein 100-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3414422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.15e-23NAC domain containing protein 50