PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17589.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 635aa    MW: 71639 Da    PI: 4.8594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17589.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.49.6e-262113431128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratks 80 
                              lp Gf+F Ptd+el+ +yL +kv gk+++ ++  + e+++yk+ePwdL +     ++ ++ +++y F++ +k +++g++  r+t s
  mrna17589.1-v1.0-hybrid 211 LPSGFKFLPTDQELLGYYLLNKVLGKPFKYDSRvMIELNLYKAEPWDLWNrfggpRL-NQGEDLYIFTELKKVSNNGSNVARTTGS 295
                              699************************888655499************753455433.356799********************** PP

                      NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+Wk   +  ev+++  +++  g  k + +   ++p+ e+ +W+m ey+l
  mrna17589.1-v1.0-hybrid 296 GTWKGDTSGSEVYVSedNKKILGSWKRFHYK-PNEPN-ENGSWIMVEYKL 343
                              ****777767776664477778999998886.45555.69********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056174.7E-1451115IPR008502Prolamin-like domain
SuperFamilySSF1019411.7E-32198364IPR003441NAC domain
PROSITE profilePS5100532.974211365IPR003441NAC domain
PfamPF023656.3E-15212343IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MASTSKLFLL TALLVLTMPF MVSSTSRPLN YPTRSKSNLA ARLKLDEESS TCWESLFQFQ  60
ACSKEVVLFF LNGETSLGEG CCKALSTIEH LCWPALLGSL GLTTEETDIL KGYCDEADQI  120
QSPPTSPSPP SVHQPTGKLV PGLDKFIPLT VSWIENPNNL LSSVSQETFQ KALKPFFSTN  180
SSSRKQPTPF LSGFPRHWLM ASSSCVHGFN LPSGFKFLPT DQELLGYYLL NKVLGKPFKY  240
DSRVMIELNL YKAEPWDLWN RFGGPRLNQG EDLYIFTELK KVSNNGSNVA RTTGSGTWKG  300
DTSGSEVYVS EDNKKILGSW KRFHYKPNEP NENGSWIMVE YKLDDSLIPK SCKGSDLVLC  360
RIRKDRKRKL IEDQMNDSSQ SSRRKVPRVD NQDGMSTHGK HILNDDTNLL ASFTQFLGSE  420
EEQKPQQQQV DSNMRFEEHE LQQQDPQVYV SPSPSYFHEQ QQQLDTNPVM VSSDHYILQS  480
VKTYEPMDVQ PSYFHVQQQH LPGDDLMGFS HHEKFRRVEN YESMSIVNAH HLENPPLQDG  540
VPFDNLFTVD ELYNEASAAT PVASEPQPTN FYCAANGNVL SYNELDDNVF REAYHPEQNN  600
DAIAAAVDES QFDDGSWLAD LMDDNNSSEY PAAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-1520936415164NO APICAL MERISTEM PROTEIN
1ut4_B1e-1520936415164NO APICAL MERISTEM PROTEIN
1ut7_A1e-1520936415164NO APICAL MERISTEM PROTEIN
1ut7_B1e-1520936415164NO APICAL MERISTEM PROTEIN
3swm_A1e-1520936618169NAC domain-containing protein 19
3swm_B1e-1520936618169NAC domain-containing protein 19
3swm_C1e-1520936618169NAC domain-containing protein 19
3swm_D1e-1520936618169NAC domain-containing protein 19
3swp_A1e-1520936618169NAC domain-containing protein 19
3swp_B1e-1520936618169NAC domain-containing protein 19
3swp_C1e-1520936618169NAC domain-containing protein 19
3swp_D1e-1520936618169NAC domain-containing protein 19
4dul_A1e-1520936415164NAC domain-containing protein 19
4dul_B1e-1520936415164NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362369RKDRKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17589.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459728.10.0PREDICTED: NAC domain-containing protein 7-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-20NAC domain containing protein 36