PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17501.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 581aa    MW: 65938.5 Da    PI: 6.5154
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17501.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.94.5e-25169256189
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              kfY eYA++vGFsvr+ + ++   +g++  r++ C+k+g++ ++k k  +e+r+r + r gC+a++ vk++k+gkw+vt+++++Hn
  mrna17501.1-v1.0-hybrid 169 KFYIEYARRVGFSVRVMQRRRG-IDGTTLARRLGCNKQGFSPNHKGKLGHEKRPRLSAREGCNATILVKMDKSGKWVVTRFVKDHN 253
                              6****************98887.9999********************9************************************** PP

                     FAR1  87 Hel 89 
                              H+l
  mrna17501.1-v1.0-hybrid 254 HPL 256
                              *99 PP
2FAR181.71.3e-25404494190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                              +fY +Y++++GF+vr++++++s++n+ ++ ++fvCskeg+r+++    +++   + ++tr gC a+l+v +++ +kw+vtk+++eH
  mrna17501.1-v1.0-hybrid 404 EFYIAYGRHTGFTVRIHHNRRSRMNNMVIGQDFVCSKEGFRDKKYVYrDNRVLPPPPVTREGCAAMLRVALRDGDKWVVTKFVKEH 489
                              6******************************************99882333344899***************************** PP

                     FAR1  86 nHela 90 
                              nH+l+
  mrna17501.1-v1.0-hybrid 490 NHTLM 494
                              ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-23169257IPR004330FAR1 DNA binding domain
PfamPF031014.6E-23404494IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MTTGCIELGV VRLMVEAAGV IAGLRLCGGG WAEGKKEKKR DYRFDQRGSV SPENKKEGRR  60
RVGGKKHVSS CDLFDPFLFF FLCACLWSPK SVRASPEEED LRTPIPFTTT LTTQFPAFVK  120
MDLEDEEDEE EEVGAVGGSA EVNMGGSEGG PVGEPYVGME FDSEEDAKKF YIEYARRVGF  180
SVRVMQRRRG IDGTTLARRL GCNKQGFSPN HKGKLGHEKR PRLSAREGCN ATILVKMDKS  240
GKWVVTRFVK DHNHPLIVTA NEFSTAGDKD KKIEELMMEL DHQDQLCAAY REKLLSFINN  300
VEAETEELSA KIQAIVDNSC DGCRAFCKNL VLEVTMETES YNNINNNPFD SDESQSCELP  360
NDIDLCSGEV DKIIQQSNGS SHLMGNPIEP YIGMEFKSRD GAREFYIAYG RHTGFTVRIH  420
HNRRSRMNNM VIGQDFVCSK EGFRDKKYVY RDNRVLPPPP VTREGCAAML RVALRDGDKW  480
VVTKFVKEHN HTLMSPSKVP WRGSGKTLIN EDEKDRKIRE LTIELSNERQ RCKRRCAAYQ  540
DQLNRLLKDI QEHSDHLSER VQDIVKNIRE LESEQYEDSE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1528533RQRCKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17501.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301085.10.0uncharacterized protein LOC110429388
TrEMBLA0A2P6PTW21e-163A0A2P6PTW2_ROSCH; Putative transcription factor FAR family
STRINGXP_004290123.11e-180(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.16e-64FAR1 family protein