PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna17500.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 202aa MW: 23378.7 Da PI: 10.0097 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 95.2 | 7.7e-30 | 36 | 123 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vk+ek+gkw vt++ +eHnH mrna17500.1-v1.0-hybrid 36 FYDAYATHMGFIMRVDAFRRSLRDGKVVWRRLVCNKEGFRKTRPKR-SESRKPRAITREGCKAMIVVKREKSGKWIVTRFIKEHNH 120 9*******************************************99.9************************************** PP FAR1 88 ela 90 +l+ mrna17500.1-v1.0-hybrid 121 SLV 123 996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-28 | 36 | 123 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MIESSNGQEA AAFEGSSDME PYVGMEFETE EAAKVFYDAY ATHMGFIMRV DAFRRSLRDG 60 KVVWRRLVCN KEGFRKTRPK RSESRKPRAI TREGCKAMIV VKREKSGKWI VTRFIKEHNH 120 SLVVTPANGR RTVLLSQTPD EKDMKIRELT AELQRERKRS AAYQEQLDMV LREMEEHSNH 180 LSRNIDDIVQ SVKEIESKRV A* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna17500.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290121.1 | 1e-148 | PREDICTED: protein FAR1-RELATED SEQUENCE 7 | ||||
Swissprot | Q9SZL8 | 2e-30 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2P6PTS1 | 1e-141 | A0A2P6PTS1_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004290121.1 | 1e-148 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-96 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna17500.1-v1.0-hybrid |
Publications ? help Back to Top | |||
---|---|---|---|
|