PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17430.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 545aa    MW: 59176.8 Da    PI: 6.8782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17430.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09367414455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  mrna17430.1-v1.0-hybrid 367 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 414
                              8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-17361432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-10361418No hitNo description
PROSITE profilePS5088815.663363413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-17363431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6367414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MENNFFLNAG IPPSLHFEPA QSMPSWRSLS TAMDIQSADQ NCSSARSPEC FYNPNWEKHS  60
TDHQNVHFES ALSSMVSSPV ASNSNISNES VVIRELIGKL GSIGNSSNEI SATIPANNSY  120
MGGGNGSTNT SCYSTPLNSP PKLNLPMMDH LAKEKLPSLG KTSMPLNSSV AEFSADPGFA  180
ERAAKFSCFG SRSFNGRTSQ QLGTHTNNSE VVYRSNQLMG NGNKLPRVSS SPSLKALGSQ  240
TEQRNSQLPN SREESKSTVV SEHQMGETGM VPSSSTDLSS RKRKAASKGK AKDPIKVAEA  300
SDVSELNAKR CKANENGNNE DGSVKAEEDT KGSTSSDEKQ GKTGAKPPEP LKDYIHVRAR  360
RGQATDSHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA LMLDEIINYV QSLQRQVEFL  420
SMKLSSVNTR LDFNMDALMS KEIFQQQSSS LPHPIFPSDS SAQAIYGHQQ NPAHCSVDPL  480
DSALCQSLGM QLPPLNAFSE AMPQYPAFGE DDLQTIVQMG FGQNTNKETE FHGSNQASHM  540
KIEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17430.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292343.10.0PREDICTED: transcription factor bHLH62
TrEMBLA0A2P6PU220.0A0A2P6PU22_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292343.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-106bHLH family protein