PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17273.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 287aa    MW: 32320 Da    PI: 5.5242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17273.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-1397139754
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  mrna17273.1-v1.0-hybrid  97 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 139
                              57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.60990139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1791154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-1393144No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1696154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-1596145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-1197139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNSEAYQSTV SPITLRNPLL SSNTIFKLSL SLLFLPIFLS FTMDNIGDEY QHYWETNMFL  60
QTEELDSWKL GEEAFSGYYD SSSPDGAASS MASKNIVSER NRRKKLNERL FALRAVVPNI  120
SKMDKASIIK DAIDYIQELH DQERRIQAEI MDLESGKSKK SVMGSSDFEQ ELPVLLRSKK  180
KKLELYDSGG SRSSSIEILE LRVTYMGEKT VVVSLTCSKR TDTMVKLCEV FESLKLKIIT  240
ANITAFAGRV LKTVFIEADE EEKDHLKVKI QTAIAALNDP QSPMSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1395139953Transcription factor MYC2
5gnj_B1e-1395139953Transcription factor MYC2
5gnj_E1e-1395139953Transcription factor MYC2
5gnj_F1e-1395139953Transcription factor MYC2
5gnj_G1e-1395139953Transcription factor MYC2
5gnj_I1e-1395139953Transcription factor MYC2
5gnj_M1e-1395139953Transcription factor MYC2
5gnj_N1e-1395139953Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17273.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296498.11e-180PREDICTED: transcription factor bHLH35
SwissprotQ2HIV94e-97BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2P6QSI01e-165A0A2P6QSI0_ROSCH; Putative transcription factor bHLH family
STRINGXP_004296498.11e-179(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-98bHLH family protein