PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17249.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HB-PHD | ||||||||
Protein Properties | Length: 705aa MW: 79119.2 Da PI: 9.6781 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.9 | 1.1e-10 | 477 | 521 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n ps++ + L+k+lgL+ ++V+ WF+N R+ mrna17249.1-v1.0-hybrid 477 RNAVEKLRQVFYENELPSKAVKDNLSKELGLDPEKVSKWFKNTRY 521 578899*************************************97 PP | |||||||
2 | PHD | 39.8 | 1e-13 | 236 | 291 | 1 | 51 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ ++++vlCd +C+ +fH+kCl+++l++e++p+g w+C+ C++k mrna17249.1-v1.0-hybrid 236 FCAKCKLNEAfpDNDIVLCDgTCNAAFHQKCLDPPLDTENIPRGdqGWFCKFCECK 291 699999955455********56*********************999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.26E-14 | 227 | 294 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.2E-12 | 232 | 291 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.264 | 234 | 291 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 6.2E-11 | 236 | 291 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 4.9E-9 | 236 | 289 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 2.17E-30 | 236 | 288 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 237 | 288 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 458 | 520 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.487 | 466 | 526 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 468 | 530 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-10 | 469 | 530 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.43E-8 | 474 | 521 | No hit | No description |
Pfam | PF00046 | 3.7E-8 | 477 | 521 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MHGLGKKSSV QESGKSRYST PLSKLLSSPK FKKSGKVSHV KKVKPKSKTT IASSLLKRRN 60 ADSSRKGTKN NDTSKKLTSR KGLHKARDAD NSNKSSSLKL QKDKVSKDGS DEKADEKGEN 120 VDGETRIRKR RRKKKSKKNK VDVDETARLQ RRTRYLLIKI KLEQNLIDAY SGEGWKGQSR 180 EKIKPERELQ RAENQILKCK LGIRDAIYQL HSLGSVGSIA DSVIDPDGSV FHEHIFCAKC 240 KLNEAFPDND IVLCDGTCNA AFHQKCLDPP LDTENIPRGD QGWFCKFCEC KMEILEVVNA 300 HLGTCFSMDS TWQDVFKEEA AFPDGGNLLL NPDEEWPSDE SDDDDYNPDR NVNSCSVSRE 360 GSDDNASDDE LSTDGSVGSD ESTDGDIVSG RRQRSSVDYK KLYDEMFGKD GLVLEQVSDD 420 EDWGPGKRKR REKESDAAST LMTLYESERN PGSVPTEVKS KPTTDTQARR SCFRIPRNAV 480 EKLRQVFYEN ELPSKAVKDN LSKELGLDPE KVSKWFKNTR YLALKTRKAE GTKDLPTSAS 540 EINKESRYEN VTGKAPDLME SDSEDISAET VVHSPRNIKK SFRRKHPKSL SSPLKKNQQK 600 GSSWLSPAKS NKEDGMELSD DVSLKKLLKG KTKEKRAKII AGSGGESQVA ELEMERLCKV 660 KSRLENMRQI LLKFQTAKAK KSKKPPLHEQ TVIYVPVAEL KEKV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 131 | RKRRR |
2 | 127 | 134 | RKRRRKKK |
3 | 128 | 134 | KRRRKKK |
4 | 129 | 137 | RRRKKKSKK |
5 | 427 | 432 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17249.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011462372.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein | ||||
Swissprot | P48785 | 1e-155 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2P6QSL6 | 0.0 | A0A2P6QSL6_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_008223879.1 | 0.0 | (Prunus mume) | ||||
STRING | EMJ25722 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-154 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | mrna17249.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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