PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna17203.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 310aa MW: 35674.9 Da PI: 7.0282

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna17203.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.5	2e-47	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 pGfrFhPt+eel+ +yLk v gk+l++ ++i+ ++iy+++PwdLp k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+ mrna17203.1-v1.0-hybrid 12 PGFRFHPTEEELLEFYLKSVVFGKRLRF-DIIEFLNIYRHDPWDLPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTETGFWKATGS 96 9***********************99.99***********8778899***************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s ++ +gl+ktLvfykgrap+g+ktdWvm+eyrl mrna17203.1-v1.0-hybrid 97 DRKIVSLsdPKRIIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 138 997666778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.615	10	156	IPR003441	NAC domain
SuperFamily	SSF101941	1.22E-56	11	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MASEMTPELE LPGFRFHPTE EELLEFYLKS VVFGKRLRFD IIEFLNIYRH DPWDLPGLSK 60 IGEREWYFFV PRDRKHGSGG RPNRTTETGF WKATGSDRKI VSLSDPKRII GLRKTLVFYK 120 GRAPRGTKTD WVMNEYRLPD HCKLLKDIVL CKIYRKATSL KVLEQRAAME EDMKMGNSPN 180 ISSSPPTSMD TTISFSSFQE QELAQHLQHH HHDLTPQTPI MPANLKKELA DDAAVAVAEE 240 QLKEENEQAV EMKESPTSLQ TPFRKNKLPE LIVPKTSMDW TQDQFWAPMN SPWLLSTPAY 300 ASLLNLELL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-48	1	156	3	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna17203.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290041.1	0.0	PREDICTED: NAC transcription factor 29
Swissprot	Q10S65	1e-102	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2P6PT44	0.0	A0A2P6PT44_ROSCH; Putative transcription factor NAM family
STRING	XP_004290041.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-106	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	mrna17203.1-v1.0-hybrid

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]