PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna17117.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 563aa MW: 63637.8 Da PI: 6.296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna17117.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	104.1	1.3e-32	85	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka++ vk++++gkw+v+ +++eH mrna17117.1-v1.0-hybrid 85 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASMSVKMQDSGKWVVSGFVKEH 170 9*************************************998888545677889*************************** PP FAR1 86 nHelap 91 nHel+p mrna17117.1-v1.0-hybrid 171 NHELVP 176 **86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-31	85	176	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.6E-11	336	382	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.226	348	384	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.4E-9	359	386	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MDNEMIEFDI GLGGREGDDD FVEIEHPVED EEMVDSPLIG SASGSVNGIG FSGGSGEIYL 60 PEGDLLDLEP YDGMEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRRDGA IIQRQFVCAK 120 EGFRNLNEKR TKDREIKRPR TITRVGCKAS MSVKMQDSGK WVVSGFVKEH NHELVPPDQV 180 HCLRSHRQIS GSAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ 240 RSLDGDIQML LDYLRQMQAD NQNFFYAVQE SRNEKEVKAD FDTMNTSPVL KTPSPMEKQA 300 SEFYTKKIFM RFQEELVGTL TFTASKGDDD GEFISYQVAK FGEDHKAYYV KLNVLEMIAN 360 CSCQMFEFSG LLCRHVLAVF RVTNVLTLPP HYVLKRWTRN AKSSVILEER SSDVYTNYLE 420 SHTVRYNTLR HQAFKFVDGA KSSETYDLAL EALKEAATKV AHAIKNDGRN VMLNGHIRGN 480 LVGGGSRANY TIGDHDESSG QNLSEDDMDK KIREITNELE CANRKCEVYR ANLLSLLKDI 540 EDHKLQLSIK VENIKISMKD GF*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MDNEMIEFDI GLGGREGDDD FVEIEHPVED EEMVDSPLIG SASGSVNGIG FSGGSGEIYL  60
PEGDLLDLEP YDGMEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRRDGA IIQRQFVCAK  120
EGFRNLNEKR TKDREIKRPR TITRVGCKAS MSVKMQDSGK WVVSGFVKEH NHELVPPDQV  180
HCLRSHRQIS GSAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ  240
RSLDGDIQML LDYLRQMQAD NQNFFYAVQE SRNEKEVKAD FDTMNTSPVL KTPSPMEKQA  300
SEFYTKKIFM RFQEELVGTL TFTASKGDDD GEFISYQVAK FGEDHKAYYV KLNVLEMIAN  360
CSCQMFEFSG LLCRHVLAVF RVTNVLTLPP HYVLKRWTRN AKSSVILEER SSDVYTNYLE  420
SHTVRYNTLR HQAFKFVDGA KSSETYDLAL EALKEAATKV AHAIKNDGRN VMLNGHIRGN  480
LVGGGSRANY TIGDHDESSG QNLSEDDMDK KIREITNELE CANRKCEVYR ANLLSLLKDI  540
EDHKLQLSIK VENIKISMKD GF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna17117.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290092.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	1e-140	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P6PTI9	0.0	A0A2P6PTI9_ROSCH; Putative transcription factor FAR family
STRING	Migut.O00582.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-137	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	mrna17117.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]