PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17054.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 291aa    MW: 32302.8 Da    PI: 7.449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17054.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.2e-0879102125
                              TSSS-HHHHHHHHHHHHHTTTT-HH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWk 25 
                              + +WT++Ede+l+++v+++G + W+
  mrna17054.1-v1.0-hybrid  79 KRKWTPDEDEKLIEVVALHGLN-WN 102
                              579*****************98.96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-774102IPR009057Homeodomain-like
SuperFamilySSF466894.29E-575102IPR009057Homeodomain-like
PfamPF002494.2E-679102IPR001005SANT/Myb domain
CDDcd001676.59E-481102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDHERSSGLR LQIHALHRSS GEHHSPSTDT SSPLRSATAS LSPSPSLSPA WSFFFIAVQV  60
FDWLLLFKNQ EPTRTALVKR KWTPDEDEKL IEVVALHGLN WNGKSLRKIV ICLTWIVIVV  120
DKETLDMLTA LGMGDIPGVE LESTELQVAL VGYGRGRPSS CLESWWQPPA RHGRYLELLS  180
VFISLSFMSS PSSYFPFMLG SIGRFPRYCS LVPIPGCSRF HDEYCKGVAV VEFFQFVEPR  240
FAWAIGLPLL CLVFVLYLCL LVVSVVWRIL GFSGAGCICL ALALIVAQIG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17054.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-