PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17037.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19703.1 Da    PI: 7.2922
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17037.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.85e-1222461539
                             HHHHHHHHHHHHHHHHHT-EEEEEE CS
                   SRF-TF 15 kRrngilKKAeELSvLCdaevavii 39
                              R++ ++KKAeELS+LC+++v++i+
  mrna17037.1-v1.0-hybrid 22 DRKKNLIKKAEELSILCGVDVCLIL 46
                             6**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.582146IPR002100Transcription factor, MADS-box
SMARTSM004320.0037159IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-11675IPR002100Transcription factor, MADS-box
PfamPF003191.5E-92346IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDRQRKIQQL SSSKSDRKKI KDRKKNLIKK AEELSILCGV DVCLILDQCQ STVVETWPQD  60
PEEVNRIITT YKANPAIRDA SIPSSEPKGL EETKAGKSHG GCQNVVDPDK ERGTKAGKSH  120
GGYKNVVDSD KEREKLYPTW DDRLDYYSEE ELIRLLASLD ARLQASANRI DNEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17037.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296466.11e-125PREDICTED: uncharacterized protein LOC101311463
STRINGXP_004296466.11e-125(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14708511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.14e-07AGAMOUS-like 103