PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17030.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 242aa MW: 27814.6 Da PI: 6.1695 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.1 | 2.9e-13 | 72 | 200 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk....................................t 48 kfY YA vGFs r k+ k ++ + + +r ++Csk+g++++ kk mrna17030.1-v1.0-hybrid 72 KFYAYYAFVVGFSRRCFKHDKAviNDVECVRRRAWCCSKQGYEDSAAKKkrkkvyetdklvteeaanekeeecedatalnkkkkkM 157 6**************9999999766667789999*********999888899**************************97654433 PP FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++ r + +rtgC+a ++v++++ + ++ev +++ +HnHe+a mrna17030.1-v1.0-hybrid 158 KTALRGIKYSRTGCEAVFQVRLNRrTMEYEVVSFVPDHNHEVA 200 3333466789*************999**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.5E-11 | 72 | 200 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEDPVILIEE QEVGRDKSDE HGNSKSVGAD DITDETVFSS EWYAALKGKN MKLLRFEDVK 60 DIIFSSLAEA DKFYAYYAFV VGFSRRCFKH DKAVINDVEC VRRRAWCCSK QGYEDSAAKK 120 KRKKVYETDK LVTEEAANEK EEECEDATAL NKKKKKMKTA LRGIKYSRTG CEAVFQVRLN 180 RRTMEYEVVS FVPDHNHEVA EPYERQFLRS CREVTMDNVC VVLSLQMAQV PTSVAYEFMA 240 L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 123 | RRRAWCCSKQGYEDSAAKKKRKK |
2 | 119 | 123 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17030.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292007.1 | 1e-152 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004292007.1 | 1e-152 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25686 | 2 | 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna17030.1-v1.0-hybrid |