PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16933.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 443aa    MW: 50113.8 Da    PI: 8.5072
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16933.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.34.6e-091761751
                             HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               rq  f +R  ++  KA+ L  LC+ +v++++ +s+g+l  +++
  mrna16933.1-v1.0-hybrid 17 KTRQRLFKNRWSTLKRKAKHLASLCNGQVCMVMSGSNGELEVWPN 61
                             5678889**********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.428363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-101480IPR002100Transcription factor, MADS-box
PfamPF003192.3E-71659IPR002100Transcription factor, MADS-box
PRINTSPR001521.7E-46304322IPR024681Ribulose bisphosphate carboxylase, small chain
Gene3DG3DSA:3.30.190.109.4E-56316436IPR000894Ribulose bisphosphate carboxylase small chain, domain
SuperFamilySSF552391.44E-50316435IPR000894Ribulose bisphosphate carboxylase small chain, domain
PRINTSPR001521.7E-46325351IPR024681Ribulose bisphosphate carboxylase, small chain
CDDcd035271.37E-56325434No hitNo description
SMARTSM009611.3E-36326434IPR000894Ribulose bisphosphate carboxylase small chain, domain
PfamPF001011.3E-38327434IPR000894Ribulose bisphosphate carboxylase small chain, domain
PRINTSPR001521.7E-46353368IPR024681Ribulose bisphosphate carboxylase, small chain
PRINTSPR001521.7E-46374403IPR024681Ribulose bisphosphate carboxylase, small chain
PRINTSPR001521.7E-46408434IPR024681Ribulose bisphosphate carboxylase, small chain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MKEKQQRLSP GKEKTQKTRQ RLFKNRWSTL KRKAKHLASL CNGQVCMVMS GSNGELEVWP  60
NPGNPAVAGA IMTKYLEAHN ERSITRKKLE LNLSDILEDQ KTDAVDTGKG FKSHDKGFAV  120
CDEEFDNFSR DSWMDLSVFL KSKVQKLDET LRSVEVSNPV YMSGYSERVG SFGQSNNNII  180
YNSFPPWKIS HCYNNPYEGI YGSTTPNSGQ TVLSNAESIG FEGVENTMHQ QRRQNINGFG  240
ERDLLSQLDQ HQQFMGIPQS HQSHFDEKMS ASIFKSPVPA SGYVGLATSP SKIFPAKDSI  300
GWTKKTVSNC SRTCCMKSWN PINNKKFETL SYLPPLSDDS IAKEIDYMLK KGWIPCLEFD  360
EVGYVQRENS RMPGYYDGRY WTLWKLPMFG CIDPSLVLNE IQECKKTYPN AYIRCVAFDN  420
QNQGQCMAFI IQKPNIAATT SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iu0_I5e-552704348175Ribulose bisphosphate carboxylase small chain 1B, chloroplastic
5iu0_J5e-552704348175Ribulose bisphosphate carboxylase small chain 1B, chloroplastic
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16933.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.14e-08AGAMOUS-like 103