PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16871.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 551aa    MW: 59476.9 Da    PI: 6.7469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16871.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.2e-09361408455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  mrna16871.1-v1.0-hybrid 361 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 408
                              8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17355426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-11355412No hitNo description
Gene3DG3DSA:4.10.280.104.6E-17357425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663357407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-6361408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10363413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MEKDNSSGTP SWNPSSLMHS NELNCAPHQL PNSYFNANWD NSMDQSDPFE SALSSMVSSP  60
AASNAVGATA FPGEGGGDMI RELIGRLGSI CNSGDISSLS YNNSTNNSCY STPLNSSPPT  120
KLNLSMVDPH MRGTFPIPAP SSHPSLAPFS ADPGFVERAA RFSSFGNLGG LNGQFNLNEA  180
ELAYRSMLKL DSGKLSRAAS NQSLRSQMGA VQESIKSSSP QDGNSFPDKK VSRFSRSSTP  240
ENGELGDSRE GSSVSEQIPA GDLSVKAENV SNSRKRKAVP KGKAKETSSS PSVKNGKAVT  300
EEQPNSKRSK TDEASGNEKE TQKSNKESNG GSKTTKDKSE VVEPPKDYIH VRARRGQATD  360
SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT  420
VNPRMDLNME ALLSKEILQS QGALQNALYQ LDSAVPASFP FGYQPQQLPP LHSNSISNET  480
DTHFPVNLNA ALTQNSTMQS PAFDRFGGAN PQAPQFFEDD LQSMVQMGFG QIEQHSLHGS  540
VASAQMKVEH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16871.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296985.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLA0A2P6QVQ90.0A0A2P6QVQ9_ROSCH; Putative transcription factor bHLH family
STRINGXP_004296985.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.12e-70bHLH family protein