PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna16710.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 19628.6 Da PI: 6.5032 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p+ r +r +lg+f t eAa a++ a++kl+g mrna16710.1-v1.0-hybrid 21 TFRGVRQRT-WGKWVAEIREPK----RgARLWLGTFNTSTEAALAYDDAARKLYG 70 69****999.**********83....46************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.16E-30 | 20 | 80 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-20 | 21 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.509 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-36 | 21 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-30 | 21 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-12 | 22 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MGRSRKGCMK GKGGPENATC TFRGVRQRTW GKWVAEIREP KRGARLWLGT FNTSTEAALA 60 YDDAARKLYG SSAKLNLPDQ SSSSASTSSK TSSGSSSNDK GGGGEHNNIK QEAYNSCDDV 120 HRGWNNDYNN GEISDYCLWE SNPVLSADWS GVCGEREFLE MNDIGVMMGG NEFVSCNMLL 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-19 | 22 | 83 | 6 | 68 | ATERF1 |
3gcc_A | 9e-19 | 22 | 83 | 6 | 68 | ATERF1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna16710.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302113.1 | 1e-131 | PREDICTED: dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A3S8T912 | 1e-103 | A0A3S8T912_FRAAN; Transcription factor ERF30 | ||||
STRING | XP_004302113.1 | 1e-131 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 2e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna16710.1-v1.0-hybrid |