PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16678.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 1194aa    MW: 135068 Da    PI: 6.1925
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16678.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.42.9e-1810301088359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                               Dg++W KY q+++ gs++pr YY C  +   gC++ k+v++s+ d++++ itY+g+H+++
  mrna16678.1-v1.0-hybrid 1030 DGFRWTKYDQRDILGSRYPREYYVCNPEeygGCMAVKEVQKSN-DQRFLRITYTGRHTCT 1088
                               9************************9887889**********9.**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522001.2E-354156IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010424.90210153IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002551.2E-3711153IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.5E-4113189IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101402.5E-2013127IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF520589.35E-46262535IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.5E-39296644IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520589.35E-46563683IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.801.2E-59401006IPR003657WRKY domain
SuperFamilySSF1182902.75E-79501006IPR003657WRKY domain
SMARTSM007741.6E-59541007IPR003657WRKY domain
PfamPF031067.9E-59621005IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-1710251090IPR003657WRKY domain
SuperFamilySSF1182902.62E-1510271090IPR003657WRKY domain
SMARTSM007741.4E-1610281089IPR003657WRKY domain
PROSITE profilePS5081116.90310301090IPR003657WRKY domain
PfamPF031066.1E-1710301087IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1194 aa     Download sequence    Send to blast
MDEPSSSSSL PTDVFLNFRG EDTRNIFVCH LHRALVRETL QVYIDKHDLQ KGDDLENLLE  60
GIAGSKLSIL VFSENYATST WCLKELVQIL KCKKDQNQIV MPVFYKVDPS DIRKQRGSFG  120
EAFAKHESDC KGDKELLQQV QSWRSALEEA ANLSGFDSNS KDYADDAGLI DAIVKKVFDK  180
VNSIPPHTED GFVAMDSHLN EMRRKINAMG RYIESSTEDG KRRRFWSEHV ERVLTDKNSA  240
ATEAEGLMIT LPDKEDRFFK ATAFEHMTKL RLLMFMYREW YYGADGKHDL IGDFNFLSSE  300
LRVFIWHKYP LQCLPSSFDP KNLVHLDMHS GRIEHLWEGP KRANNLRIIN LIGCPLKETP  360
DLTEVPNLES LVMGGGIIGG RPSFTEVHPS ILGHENLVFL SLAGCHELKT LPRRILMKSL  420
KTLDLSHCVN LEMFPEISED MKALSVLSLY QTAIMELPSS IERLRGLQSL DMTFCRKLIR  480
LPDSICNLAK LRSLKLKDCS KLSKLPENIG NMDSLLELEV DLGGLEQLPV SILRLKLGGR  540
LSFHGCKMAA PFSSWPLSIE DRCTDVVHLD FSGCNMMKLS DAIACFPSLK VLKLSRNNLE  600
RLPAAMKELG CLERLELDGC KRLRSIPELS STISYINAQN CTALETVSAP QSPYEIGRCF  660
IFSNCCNLVH EDVFKDIVGT HFPPQGNPSR PFYFSCPGSE ILGQFIHSEG SSVTAKLPPN  720
CFDNKFLGFA ITAITNNPQG VDYYNLIVRC FFTFKGDQCQ YRSSFYLFDS HFDSLCRDWL  780
KSSHMLVGYV PWSEFGINGE KVNERHYTEA KFEIELLHSE VGDVVMTKAR FDPSIERCFP  840
GIKRCGVQFF FANNEDKEVI YQDFGEPMVQ VLDNSEIRSL EGCSAEASCS EITGHPSDEE  900
ERFLKLSEVF EGAYRKPSRY MKTEDNEDSS GKRETLKNWK QKVKVTSGLT QGHLDDGFNW  960
SIGSSGIERC KYRCAHGLGC WAKAIVPTPI DPTIRNITYV GRHTCWKTQP MLTHQVRITL  1020
GMETIGGPFD GFRWTKYDQR DILGSRYPRE YYVCNPEEYG GCMAVKEVQK SNDQRFLRIT  1080
YTGRHTCTLP STGIGGRTDS STSFASSASS GSSEEIAELL RSLGPDLEGI VNFLNNADNQ  1140
IALRDEFSRA RGVNDMENNN NNVTGCLCWF RSLWNFMTSK KNTPEIHEDE EGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A4e-3951811169TIR-NB-LRR type resistance protein RPV1
5ku7_B4e-3951811169TIR-NB-LRR type resistance protein RPV1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202223RRKINAMGRYIESSTEDGKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16678.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304776.10.0PREDICTED: TMV resistance protein N-like
TrEMBLA0A2P6PG280.0A0A2P6PG28_ROSCH; Putative transcription factor WRKY family
STRINGXP_004304776.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2620723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.14e-30WRKY family protein