PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna16677.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 605aa MW: 68779.3 Da PI: 5.3482 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 28.8 | 2.7e-09 | 269 | 293 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k r+rW +eLHe+Fveav qLGGse mrna16677.1-v1.0-hybrid 269 KDRIRWIQELHEAFVEAVIQLGGSE 293 68*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.8E-6 | 99 | 169 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 4.0E-4 | 100 | 156 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 267 | 294 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MSWNPHGAAV NLSSRHLSIS FADVTGAWRL IFVAEGTEVE TESEGAAVNL SSRHIRPINH 60 PRTSFFDPHT SFFDPQMDIE LIFIQFKDVP AAYSVELGSK DETVNDIKEK LKKEYPNGRH 120 LKPQETLVYK NQELKGGDLI TEYHLPKNTL LHVAERNAVA APTSPKNVKE KEEEGPWDLG 180 VVQSVKQGQL QPVDLLTMDE PFYNNPFLKP KEMNVNRSSG TPAPNLNGSR RKMVVEDETT 240 KLKRSGSYLK LAMDNCSSPD PESSAPSTKD RIRWIQELHE AFVEAVIQLG GSESGNIEQP 300 DTYRSHQKVE LQKRLYEQLE QIAIFAQQLE AVGVDQHAFS IVRSERRQRT AEPETTPTST 360 LSPSFLPPLR ASASSTLGKT FVFYHFFLRL LRVQTNDSFS FVDKHKLLVT VNVIVLLRVI 420 FVVCAADESE EEAKTNITRQ KRKMKSWWSR FLNYPMTKSG RLILVSRMTL KAKYVVLSEM 480 LNQSGFSWNE QEMMLVCEQS VFIEWVEKRN KDVAGLYGKP FWHYYNLGEI YGRDHANGQN 540 LGNADDDDEE EIRRENTNAD PFNLEDETLF DNVNQSVDME PQHEGFEDVD VSFTQPSPQT 600 PSVS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna16677.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.4 | 9e-08 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna16677.1-v1.0-hybrid |